CuGenDBv2

Gene ID	Clc06G12930
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Genome location	ClcChr06:23853776..23857828
RNA-Seq Expression	Clc06G12930
Synteny	Clc06G12930
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]

2.8e-46

82.64

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL+G AREAKRRLDERLRTQRKS   R+    
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        K NWTKLNW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]

1.6e-46

82.64

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL+G AREAKRRLDERLRTQRKS        R
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        K NWTKLNW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

XP_022988483.1 uncharacterized protein LOC111485711 isoform X1 [Cucurbita maxima]

1.4e-45

81.82

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL G AREAKRRLDERLRTQ KS        R
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        KFNWTK NW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]

2.8e-46

80.99

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQALTRRS+LCLYTSNHETLLASNPSL+RSLL+EA+EDDKL+G AREAKRRLDERLRTQRKS        R
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        KFNWTKLNW  VE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

XP_038876903.1 uncharacterized protein LOC120069257 [Benincasa hispida]

3.4e-52

87.6

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRS+LCLYTSNHE+LLASNPSLQRSLLIEA ED++L+G AREAKRRLD+RLRTQRKSEDGREM RR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        KF+WTKLNW+GVEED C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B9W3 uncharacterized protein LOC103487385 isoform X1

9.6e-45

78.86

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERL-RTQRKSED-GREMR
        MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRS+LCLYTSNHE LL SNPS+QR LL+EA  +D+L+GIAREAKRRLDERL RTQRKSED GREM 
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERL-RTQRKSED-GREMR

Query:  RRKFNWTKLNWNGVEEDTCVKGW
        RRKF+W KLNW GVEED C + W
Subjt:  RRKFNWTKLNWNGVEEDTCVKGW

A0A5A7U973 Putative E3 ubiquitin-protein ligase RHY1A

1.4e-43

78.05

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERL-RTQRKSED-GREMR
        MAGMLPGVECARRRRCHQNK+WSDSP + AQ LTRRS+LCLYTSNHE LL SNPS+QR LL+EA  +D+L+GIAREAKRRLDERL RTQRKSED GREM 
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERL-RTQRKSED-GREMR

Query:  RRKFNWTKLNWNGVEEDTCVKGW
        RRKF+W KLNW GVEED   + W
Subjt:  RRKFNWTKLNWNGVEEDTCVKGW

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X1

1.3e-46

82.64

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL+G AREAKRRLDERLRTQRKS   R+    
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        K NWTKLNW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

A0A6J1E765 uncharacterized protein LOC111430042 isoform X2

7.9e-47

82.64

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL+G AREAKRRLDERLRTQRKS        R
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        K NWTKLNW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X1

6.7e-46

81.82

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRS+LCLYTSNHETLLASNPSL+RSLLIEA+EDDKL G AREAKRRLDERLRTQ KS        R
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRR

Query:  KFNWTKLNWNGVEEDTCVKGW
        KFNWTK NW GVE+D C + W
Subjt:  KFNWTKLNWNGVEEDTCVKGW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G15580.1 RING/U-box superfamily protein

6.9e-11

42.34

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPI-----------AAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEA---EEDDKLEGIAREAKRRLDERLR
        MAGMLPGVECARRRR H       +PPI           A    TRR    LYT+NHE+  A     +RS+  ++   + D+KL+G A+EAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPI-----------AAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEA---EEDDKLEGIAREAKRRLDERLR

Query:  -TQRKSEDGRE
           R  ++G++
Subjt:  -TQRKSEDGRE

AT2G15580.2 RING/U-box superfamily protein

1.1e-13

40.83

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPPI-----------AAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEA---EEDDKLEGIAREAKRRLDERLR
        MAGMLPGVECARRRR H       +PPI           A    TRR    LYT+NHE+  A     +RS+  ++   + D+KL+G A+EAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPI-----------AAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEA---EEDDKLEGIAREAKRRLDERLR

Query:  TQRKSEDGREMRRRKFNWTK
           ++  G+ ++ +  NW+K
Subjt:  TQRKSEDGREMRRRKFNWTK

Sequences

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CDS sequence

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ATGGCCGGAATGCTTCCTGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCAATCGCCGCTCAGGCCTTAACCAGAAGATC
CCTTCTCTGCTTGTACACAAGTAACCACGAAACGCTTCTCGCCTCAAATCCTTCTCTGCAAAGAAGCCTGTTAATCGAGGCAGAAGAAGACGATAAGTTGGAGGGAATTG
CGAGAGAAGCGAAGAGGAGATTGGATGAGCGATTGAGAACGCAGAGGAAATCGGAGGATGGAAGAGAAATGAGGAGGAGAAAGTTCAATTGGACGAAGTTGAATTGGAAT
GGCGTAGAGGAAGATACGTGCGTGAAAGGTTGGCTGAGAGCTTTTGGGCAAGAACCACCATATGTTGGAGAAGTACCTTTGCGTTGGAGAGAAATGGTGGACAAGAGTGA
AGGAGCAAGAACTATCAAGTGTTGGCCATGGCTATGCGTTGGTAAGCCTTGCGTTGGAAGCTCCGGTAAAGAGAAGAAAGCATATGCTATGCGTTGGTCGTTGTCATGCG
TTGGAGGCAGTTGTGTGTGGATTGTTGTTGTAGGCGTGGAGGTAGCATGCGTTAATGAGCTGAAGCCATGCGTTGATAAACAACGAGGAAAGGTAGAAGAAGGTGTTCAT
GTCGAATTCGAGAGGAATTCTATTCGTTTTGGTGGTGTAACTAAAGCTGGAATAGAAAGTTTGATTGTGGTCGTGAAATCCGAGCATGGTCTAGTATTTGGAGAAGTGCG
AGCTGAGGAAGTTGAAGATAGGGCTGAAATTTTGAGGTTAATAGAAGTGAGAACAAAAGGAAAGGAAGAAACTGTGGCTGCGGGTGTCGCTGGAACTGCAGTGTCGCTAA
GAAGTTGGAAAGTGAGTAGCGAGATGAGTGTCGCTGGTAGCGTAGAGAGCTATGCGTCTCACAAATCTCGCTGA

mRNA sequence

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Protein sequence

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MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSLLCLYTSNHETLLASNPSLQRSLLIEAEEDDKLEGIAREAKRRLDERLRTQRKSEDGREMRRRKFNWTKLNWN
GVEEDTCVKGWLRAFGQEPPYVGEVPLRWREMVDKSEGARTIKCWPWLCVGKPCVGSSGKEKKAYAMRWSLSCVGGSCVWIVVVGVEVACVNELKPCVDKQRGKVEEGVH
VEFERNSIRFGGVTKAGIESLIVVVKSEHGLVFGEVRAEEVEDRAEILRLIEVRTKGKEETVAAGVAGTAVSLRSWKVSSEMSVAGSVESYASHKSR

Clc06G12930 (gene) of Watermelon (cordophanus) v2 genome