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Clc06G12955 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G12955
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:23880917..23881207
RNA-Seq ExpressionClc06G12955
SyntenyClc06G12955
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050036.1 hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa]2.5e-2772.63Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS
        +GSCVFDGS+S+Q FLIERRPYHRNCGCALHD  R +NGAAC H++KLK SVSFLKTQK    SL +L SSSK+SS+Q +NSE P F+SQFSTSS
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS

KAG6587851.1 hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia]7.9e-1357.89Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSS
        +G CVFDGSIS++ FLIERRPYHRNCGCAL  H R+KNG  C H+  L +SVSFLK +KWT      + + S+ S+
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSS

KGN65216.1 hypothetical protein Csa_019753 [Cucumis sativus]4.5e-2468.69Show/hide
Query:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS
        G+GS VFDGS+S+Q FLIERRPYHRNCGCALHD  RI+NGAAC H+LK K SVSFLKTQK  K SL +L SSS+   Q +NSE PP    F+ QFSTSS
Subjt:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS

XP_023531631.1 uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]3.0e-1251.06Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPPFLSQFSTSS
        +G CVFDGSIS+  FLIERRPYHRNCGCAL  H R KNG  C H+  L TSVSFLK +KWT      + + S+ S+   ++ P   L   S+ +
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPPFLSQFSTSS

XP_023531633.1 uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]7.9e-1359.21Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSS
        +G CVFDGSIS+  FLIERRPYHRNCGCAL  H R KNG  C H+  L TSVSFLK +KWT      + + S+ S+
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LZ02 Uncharacterized protein2.2e-2468.69Show/hide
Query:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS
        G+GS VFDGS+S+Q FLIERRPYHRNCGCALHD  RI+NGAAC H+LK K SVSFLKTQK  K SL +L SSS+   Q +NSE PP    F+ QFSTSS
Subjt:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPP----FLSQFSTSS

A0A1R3G2J8 Uncharacterized protein5.7e-0952.7Show/hide
Query:  CVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQ
        CVF+GSI +Q  LIERRPYHRNCGCALH     K   AC  +     ++SF K  KW + SL +  S+SK SSQ
Subjt:  CVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQ

A0A2P6RIE3 Uncharacterized protein2.6e-0947.44Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ
        I  CVF+GS+S+Q   IERRPYH+NC CALH  +R     AC  +   + ++SF K Q WT  SL +  ++SK+SS Q
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ

A0A2P6RIF2 Uncharacterized protein3.4e-0946.91Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNS
        I  CVF+GS+S+Q   IERRPYH+NC CALH  +    G ACL++   + ++SF K Q WT  SL +  ++SK+SS   N+
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNS

A0A5A7U781 Uncharacterized protein1.2e-2772.63Show/hide
Query:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS
        +GSCVFDGS+S+Q FLIERRPYHRNCGCALHD  R +NGAAC H++KLK SVSFLKTQK    SL +L SSSK+SS+Q +NSE P F+SQFSTSS
Subjt:  IGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQ-LNSEPPPFLSQFSTSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46490.1 unknown protein5.9e-0635.96Show/hide
Query:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHD-------HRRIKNGAACLHSLKLKTSVSFLKTQKWTK---PSLHLLHSSSKLSSQQ
        GI   +F+G IS     IERRPYH+NCGCALHD       ++  +   +C        S+SF   + W++    +++L  SSS  S+ Q
Subjt:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHD-------HRRIKNGAACLHSLKLKTSVSFLKTQKWTK---PSLHLLHSSSKLSSQQ

AT5G35110.1 unknown protein1.8e-0739.76Show/hide
Query:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAA-CLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNS
        GI   +F+G IS     I+RRPYH+NCGCALH+  R    A  C H       V F   + W++ +   LH +S  SS  L S
Subjt:  GIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAA-CLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTGGATCATGTGTGTTTGATGGAAGCATTTCGATACAACACTTTCTGATTGAACGAAGGCCTTACCATCGAAACTGTGGCTGTGCATTACACGACCATCGAAG
AATAAAAAACGGAGCTGCTTGTTTGCATTCTCTCAAACTCAAAACCTCTGTTTCCTTTCTCAAAACCCAAAAATGGACAAAACCTTCTCTCCACTTACTTCATTCCTCTT
CCAAACTCTCCTCTCAACAACTTAACTCTGAACCTCCTCCTTTTCTTTCCCAATTTTCAACTTCTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTGGATCATGTGTGTTTGATGGAAGCATTTCGATACAACACTTTCTGATTGAACGAAGGCCTTACCATCGAAACTGTGGCTGTGCATTACACGACCATCGAAG
AATAAAAAACGGAGCTGCTTGTTTGCATTCTCTCAAACTCAAAACCTCTGTTTCCTTTCTCAAAACCCAAAAATGGACAAAACCTTCTCTCCACTTACTTCATTCCTCTT
CCAAACTCTCCTCTCAACAACTTAACTCTGAACCTCCTCCTTTTCTTTCCCAATTTTCAACTTCTTCATAG
Protein sequenceShow/hide protein sequence
MGIGSCVFDGSISIQHFLIERRPYHRNCGCALHDHRRIKNGAACLHSLKLKTSVSFLKTQKWTKPSLHLLHSSSKLSSQQLNSEPPPFLSQFSTSS