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Clc06G13380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G13380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein sumv-1 like
Genome locationClcChr06:24292716..24293310
RNA-Seq ExpressionClc06G13380
SyntenyClc06G13380
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035091.1 putative transmembrane protein [Cucumis melo var. makuwa]4.3e-3489.41Show/hide
Query:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M GSQQVNA  D MKGPSPAQH+TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLY+KKKPEASALDVAKVT GISTP+NT PR
Subjt:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

KAE8126076.1 hypothetical protein FH972_020822 [Carpinus fangiana]1.7e-2777.91Show/hide
Query:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G QQV A  A+ MKGPSP QHSTEVLHQR+KLP CPMRMAIGGFAI A LGY VLYSKKKPEASA DVAKV  G+S PENT PR
Subjt:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

KAG2717864.1 hypothetical protein I3760_03G194000 [Carya illinoinensis]1.5e-2673.26Show/hide
Query:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G + V A  A+ MKGPSP QHSTE LHQR+KLP CPMRMAIGGFAI ATL YF+LYSKKKPEASA+DVAKV  G+S P+NT PR
Subjt:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

PQP98417.1 hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora]1.1e-2674.71Show/hide
Query:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALDVAKV  G S PENT PR
Subjt:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

XP_022134574.1 uncharacterized protein LOC111006810 [Momordica charantia]1.3e-2778.82Show/hide
Query:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M GSQQ+N       GPSPAQH+TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL +KKKPEASALDVAKVTAG++TPENTRPR
Subjt:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

TrEMBL top hitse value%identityAlignment
A0A314XVK0 Uncharacterized protein9.3e-2774.71Show/hide
Query:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALDVAKV  G S PENT PR
Subjt:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

A0A314Y3C0 Uncharacterized protein5.5e-2774.71Show/hide
Query:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LY+KKKPEASALDVAKV  G S PENT PR
Subjt:  MPGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

A0A5D3BA37 Putative transmembrane protein2.1e-3489.41Show/hide
Query:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M GSQQVNA  D MKGPSPAQH+TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLY+KKKPEASALDVAKVT GISTP+NT PR
Subjt:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

A0A5N6RUE0 Uncharacterized protein8.4e-2877.91Show/hide
Query:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M G QQV A  A+ MKGPSP QHSTEVLHQR+KLP CPMRMAIGGFAI A LGY VLYSKKKPEASA DVAKV  G+S PENT PR
Subjt:  MPGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

A0A6J1BZ44 uncharacterized protein LOC1110068106.5e-2878.82Show/hide
Query:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        M GSQQ+N       GPSPAQH+TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL +KKKPEASALDVAKVTAG++TPENTRPR
Subjt:  MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G31830.1 unknown protein1.3e-1245.12Show/hide
Query:  SQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR
        S+ V AA        P  +   VLHQR+ LP     MA+ G AI+  + Y V+Y+KKKPEA+A DVAK   G + PE+T PR
Subjt:  SQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGATCACAGCAAGTAAATGCCGCCGCTGACGGAATGAAGGGCCCATCTCCGGCTCAGCACAGCACCGAGGTTCTTCACCAGCGCAAGAAACTTCCTGTT
TGTCCGATGAGAATGGCGATCGGCGGTTTTGCCATCGCCGCTACGCTAGGTTACTTTGTCCTCTACTCCAAGAAGAAGCCGGAAGCTTCCGCGCTTGATGTCGCG
AAAGTTACCGCCGGTATCTCTACTCCGGAGAATACTCGTCCTCGCGTGTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAGAAAAAGAATCGAAAACCAGAGGAAGAACAGAGCATCGGCAATGCCAGGATCACAGCAAGTAAATGCCGCCGCTGACGGAATGAAGGGCCCATC
TCCGGCTCAGCACAGCACCGAGGTTCTTCACCAGCGCAAGAAACTTCCTGTTTGTCCGATGAGAATGGCGATCGGCGGTTTTGCCATCGCCGCTACGCTAGGTTA
CTTTGTCCTCTACTCCAAGAAGAAGCCGGAAGCTTCCGCGCTTGATGTCGCGAAAGTTACCGCCGGTATCTCTACTCCGGAGAATACTCGTCCTCGCGTGTAGAG
ATTTACGAAATGGCTTTTAATCTGTAGTCTTCTTCTTCTTCGAAAGAGAGATTCTGTCATGCATTCTTTTTGTTATGGTTTTTCTTCGGTTCAAGTTTTTGATAT
GATGATATGTAATACGTTTTTTGGTTAAATTATGAAACGTCCTTTTGTCAAACGTTTTCACTCAAAATTAGGATGAAAATACAACAGGATGTGGCAACTCATGAA
ATTAGTAATCCAAGCAGTAAAGATAGTTTAAAAAATAATAGTTGGAATTCCCTATTTAAAAAATATTAAA
Protein sequenceShow/hide protein sequence
MPGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYSKKKPEASALDVAKVTAGISTPENTRPRV