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Clc06G13470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G13470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:24344326..24344652
RNA-Seq ExpressionClc06G13470
SyntenyClc06G13470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035100.1 hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa]1.3e-1963.64Show/hide
Query:  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICF
        MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL  KII KRGVRSGV  G ST SSS ++ SSFFN+GSLICF
Subjt:  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICF

Query:  HIAFVFALLL
        +IAFVFA+ L
Subjt:  HIAFVFALLL

KAG6587814.1 hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia]5.4e-1861.82Show/hide
Query:  MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNS---ILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLIC
        MA I R F PI LI LLLLSES  +SSAD  QD  S   IL RN++H  EH+R DKD+GSSL  KI +KRG RS VI GHS+ SSS+RV   FNI S+IC
Subjt:  MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNS---ILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLIC

Query:  FHIAFVFALL
        F  AF FALL
Subjt:  FHIAFVFALL

KGN65176.1 hypothetical protein Csa_019975 [Cucumis sativus]3.7e-1964.55Show/hide
Query:  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICF
        AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL  KI +KRGVRSGVI G ST SSS RV  SSFFN+GS+ICF
Subjt:  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICF

Query:  HIAFVFALLL
        +IAFV A+ L
Subjt:  HIAFVFALLL

TrEMBL top hitse value%identityAlignment
A0A0A0LYV9 Uncharacterized protein1.8e-1964.55Show/hide
Query:  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICF
        AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL  KI +KRGVRSGVI G ST SSS RV  SSFFN+GS+ICF
Subjt:  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV--SSFFNIGSLICF

Query:  HIAFVFALLL
        +IAFV A+ L
Subjt:  HIAFVFALLL

A0A5D3BCG4 Uncharacterized protein6.2e-2063.64Show/hide
Query:  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICF
        MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL  KII KRGVRSGV  G ST SSS ++ SSFFN+GSLICF
Subjt:  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRV-SSFFNIGSLICF

Query:  HIAFVFALLL
        +IAFVFA+ L
Subjt:  HIAFVFALLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTAT
ACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTGA
TTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTAT
ACTCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGCGTGA
TTACAGGTCATTCCACTAGATCGTCGTCCACCCGAGTGTCGTCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGA
Protein sequenceShow/hide protein sequence
MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNSILRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGHSTRSSSTRVSSFFNIGSLICFHIAFVFALLL