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Clc06G14140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G14140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein PP2-B10-like
Genome locationClcChr06:25081540..25084361
RNA-Seq ExpressionClc06G14140
SyntenyClc06G14140
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK09497.1 F-box protein PP2-B10-like [Cucumis melo var. makuwa]8.2e-3577.57Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ K     GEEIS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  FLPTDW++LIS+RK SNLNFDPISS KKEIFFSLC D PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        +IDDGNK
Subjt:  LIDDGNK

XP_038878468.1 F-box protein PP2-B10-like [Benincasa hispida]2.5e-3980.91Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        M E+ K K TEGEEIS FSSLPEGVVAKI+SLTTP DACR SAVSRTF AAAQSDIVW + LPTDWKLLIS+RK SNLNFDPISSPKKEIFFSLC+  PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNKIMA
        LIDDGNK ++
Subjt:  LIDDGNKIMA

XP_038878692.1 F-box protein PP2-B10-like [Benincasa hispida]5.0e-4085.05Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ KGKATE EEIS FSSLPEGVVAKI+SLTTPPD CR SAV RTFVAA+QSDIVW RFLPTDW+LLIS+RK SNLNFDPISSPKKE FFSLCD  PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        LIDDGNK
Subjt:  LIDDGNK

XP_038879792.1 F-box protein PP2-B10-like [Benincasa hispida]4.0e-3779.82Show/hide
Query:  EEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLL
        EE+ KGKATEGEEIS FSSLP GVVAKI SLTTP D CR SAVSR FVAAAQSD VW RFLPTDW+LLIS+RK+SNLNFDPISS KKEIFFSLC+  P+L
Subjt:  EEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLL

Query:  IDDGNKIMA
        IDDGNK ++
Subjt:  IDDGNKIMA

XP_038880064.1 F-box protein PP2-B10-like [Benincasa hispida]2.3e-3776.36Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE   G+A EGEEIS FSSLPEGVVAKI+SLTTPPDACR SAVSRTF AAAQSDIVW  FLPTDW+LLIS+RK   + FDPISSPKK+IFFSLC + P+
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNKIMA
        LIDDGNK ++
Subjt:  LIDDGNKIMA

TrEMBL top hitse value%identityAlignment
A0A0A0LWS1 F-box domain-containing protein1.7e-3375.7Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ K     GE IS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  FLPTDW++LIS+RK SNLNFDPISS KK IFFSLC D PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        +IDDGNK
Subjt:  LIDDGNK

A0A0A0LX65 F-box domain-containing protein6.4e-3371.96Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        ME + KGKA EGE++S FSSLPEGVVAKI+SLTTPPDAC  SAVS+ F AAAQSDIVW +FLPTDW+L IS+   + L FDPI SPKK+IFFSLC   P+
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        LIDDGNK
Subjt:  LIDDGNK

A0A1S3BWT7 F-box protein PP2-B10-like4.0e-3577.57Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ K     GEEIS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  FLPTDW++LIS+RK SNLNFDPISS KKEIFFSLC D PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        +IDDGNK
Subjt:  LIDDGNK

A0A5A7UXV0 F-box protein PP2-B10-like4.0e-3577.57Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ K     GEEIS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  FLPTDW++LIS+RK SNLNFDPISS KKEIFFSLC D PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        +IDDGNK
Subjt:  LIDDGNK

A0A5D3CBY5 F-box protein PP2-B10-like4.0e-3577.57Show/hide
Query:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL
        MEE+ K     GEEIS FSSLPEGVVAKI+S TTP DACR S VS TFVAAAQSDIVW  FLPTDW++LIS+RK SNLNFDPISS KKEIFFSLC D PL
Subjt:  MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPL

Query:  LIDDGNK
        +IDDGNK
Subjt:  LIDDGNK

SwissProt top hitse value%identityAlignment
Q570N1 F-box protein PP2-B32.1e-1243.48Show/hide
Query:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        S F  LPE  ++ I+S TTP DAC  ++VS+ F +A QSD VW +FLP D+  L+ + +        +   KKE+ FSLC   PLLI+ G K
Subjt:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

Q9FV02 F-box protein SKIP31.1e-1650Show/hide
Query:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDG
        S+  SLPEG ++ I+S T+P DAC  +AVS+ F +A +SDIVW +FLPTD++ LI+  +        + S KKE++FSLC+D PLLI+DG
Subjt:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDG

Q9ZVQ6 F-box protein PP2-B104.9e-1443.62Show/hide
Query:  EISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        E S F S PE  ++ I+S T P DAC  + VS+TF +  +SDI+W +FLP D++ LI   +        + S KKE++FSLC+D P+L DD  K
Subjt:  EISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

Q9ZVQ8 Putative F-box protein PP2-B82.2e-1446.24Show/hide
Query:  ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        ++    LPE  V+ I+S T+P DAC L++VS+TF +A +SDIVW +F+P +++ LISQ ++    F  +S  KKE++F+LCD   +LIDDG K
Subjt:  ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

Q9ZVR5 Putative F-box protein PP2-B24.9e-1441.3Show/hide
Query:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        S F +LPE  ++ I+S T+P DAC  ++VS+TF +A  SD VW +FLP+D+  L+   +        + S KKE++F++CD+ P+L++DG K
Subjt:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

Arabidopsis top hitse value%identityAlignment
AT1G56250.1 phloem protein 2-B147.2e-1346.59Show/hide
Query:  LPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKI
        LPE  +A I++ T+P DA   S VS  F  A  SD VW +FLP+D+K LISQ    + N     S KKEI+  LCD   LLID+  K+
Subjt:  LPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKI

AT2G02250.1 phloem protein 2-B23.5e-1541.3Show/hide
Query:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        S F +LPE  ++ I+S T+P DAC  ++VS+TF +A  SD VW +FLP+D+  L+   +        + S KKE++F++CD+ P+L++DG K
Subjt:  SSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

AT2G02320.1 phloem protein 2-B71.9e-1333.33Show/hide
Query:  SFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMAEQ-MDQ
        S   LPE  ++ I+S T+P DAC  + VS+TF +A QSDIVW +F+P +++ L+S+ +          S KKE+FF+LCD+  L+      +  E+   +
Subjt:  SFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNKIMAEQ-MDQ

Query:  RCEKSAQLGMKFDVKVSGHHKFNFST-PINS-----PKLLHSRERETSSR
        RC   +   +     +S HH + + T P+++     P+LL +R  E   R
Subjt:  RCEKSAQLGMKFDVKVSGHHKFNFST-PINS-----PKLLHSRERETSSR

AT2G02340.1 phloem protein 2-B81.6e-1546.24Show/hide
Query:  ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        ++    LPE  V+ I+S T+P DAC L++VS+TF +A +SDIVW +F+P +++ LISQ ++    F  +S  KKE++F+LCD   +LIDDG K
Subjt:  ISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK

AT2G02360.1 phloem protein 2-B103.5e-1543.62Show/hide
Query:  EISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK
        E S F S PE  ++ I+S T P DAC  + VS+TF +  +SDI+W +FLP D++ LI   +        + S KKE++FSLC+D P+L DD  K
Subjt:  EISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDGNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGACGGAAAGGGGAAGGCAACGGAGGGGGAAGAAATTTCTAGTTTCTCTTCGCTGCCTGAAGGAGTCGTAGCTAAAATCATGTCGCTGACCACTCCA
CCGGATGCCTGCCGATTGTCGGCGGTTTCTAGGACTTTCGTTGCGGCGGCGCAGTCGGATATCGTCTGGGGCAGATTCCTGCCCACCGATTGGAAGCTTTTGATT
TCTCAGCGGAAATCTAGCAACCTCAATTTTGATCCAATTTCAAGTCCTAAGAAAGAGATCTTTTTCTCCCTTTGCGATGACTGCCCTTTGCTAATTGATGACGGC
AATAAGATCATGGCAGAACAAATGGACCAACGATGTGAAAAGTCTGCGCAGCTGGGCATGAAATTTGATGTAAAGGTGTCAGGTCATCATAAGTTCAACTTTTCG
ACGCCTATAAATAGCCCAAAGCTTCTCCATTCAAGGGAGAGAGAAACGAGTTCAAGAGATGAAAGCTCCGCACAAATTCTCCCTCACCATAACCAGCCTCCATTT
CAAGCTCTTCTGAGAGAAGGATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGACGGAAAGGGGAAGGCAACGGAGGGGGAAGAAATTTCTAGTTTCTCTTCGCTGCCTGAAGGAGTCGTAGCTAAAATCATGTCGCTGACCACTCCA
CCGGATGCCTGCCGATTGTCGGCGGTTTCTAGGACTTTCGTTGCGGCGGCGCAGTCGGATATCGTCTGGGGCAGATTCCTGCCCACCGATTGGAAGCTTTTGATT
TCTCAGCGGAAATCTAGCAACCTCAATTTTGATCCAATTTCAAGTCCTAAGAAAGAGATCTTTTTCTCCCTTTGCGATGACTGCCCTTTGCTAATTGATGACGGC
AATAAGATCATGGCAGAACAAATGGACCAACGATGTGAAAAGTCTGCGCAGCTGGGCATGAAATTTGATGTAAAGGTGTCAGGTCATCATAAGTTCAACTTTTCG
ACGCCTATAAATAGCCCAAAGCTTCTCCATTCAAGGGAGAGAGAAACGAGTTCAAGAGATGAAAGCTCCGCACAAATTCTCCCTCACCATAACCAGCCTCCATTT
CAAGCTCTTCTGAGAGAAGGATTCTGA
Protein sequenceShow/hide protein sequence
MEEDGKGKATEGEEISSFSSLPEGVVAKIMSLTTPPDACRLSAVSRTFVAAAQSDIVWGRFLPTDWKLLISQRKSSNLNFDPISSPKKEIFFSLCDDCPLLIDDG
NKIMAEQMDQRCEKSAQLGMKFDVKVSGHHKFNFSTPINSPKLLHSRERETSSRDESSAQILPHHNQPPFQALLREGF