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Clc06G15090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G15090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionisoamylase 1, chloroplastic
Genome locationClcChr06:26039037..26039485
RNA-Seq ExpressionClc06G15090
SyntenyClc06G15090
Gene Ontology termsGO:0005977 - glycogen metabolic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0019156 - isoamylase activity (molecular function)
InterPro domainsIPR004193 - Glycoside hydrolase, family 13, N-terminal
IPR013783 - Immunoglobulin-like fold
IPR014756 - Immunoglobulin E-set
IPR044505 - Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28535.1 isoamylase 1 [Cucumis melo var. makuwa]9.4e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

XP_004149676.1 isoamylase 1, chloroplastic [Cucumis sativus]9.4e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +NRVTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFD SRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

XP_008453530.1 PREDICTED: isoamylase 1, chloroplastic [Cucumis melo]9.4e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

XP_022973965.1 isoamylase 1, chloroplastic [Cucurbita maxima]1.7e-3781.32Show/hide
Query:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        + L+ ++ +Q  RV QEI LDPLTN+TGDVWHVFLKGDFT+MLYGYKF GKFSPQEGCYFDPSRILLDPYAKAVISR EFGALGP+DNCWP
Subjt:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

XP_038879251.1 isoamylase 1, chloroplastic [Benincasa hispida]1.6e-4095.06Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKF+GKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

TrEMBL top hitse value%identityAlignment
A0A1S3BVW8 isoamylase 1, chloroplastic4.5e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

A0A5A7UQM5 Isoamylase 14.5e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

A0A5D3DYX3 Isoamylase 14.5e-4196.3Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        +N VTQEI LDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

A0A6J1BZK5 isoamylase 1, chloroplastic1.0e-3780.22Show/hide
Query:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        + L+ ++ +Q NRVT+E+ LDPLTNKTGDVWHVFLKG FTEMLYGYKFDG+FSPQ+GCYFDPSRILLDPYAKAVISRGEFGA GP++NCWP
Subjt:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

A0A6J1ICQ3 isoamylase 1, chloroplastic8.0e-3881.32Show/hide
Query:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        + L+ ++ +Q  RV QEI LDPLTN+TGDVWHVFLKGDFT+MLYGYKF GKFSPQEGCYFDPSRILLDPYAKAVISR EFGALGP+DNCWP
Subjt:  MALVTIYFVQ-NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

SwissProt top hitse value%identityAlignment
A1JSI8 Glycogen debranching enzyme1.4e-1045.76Show/hide
Query:  QEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV
        QE+R+ PL  ++GD+WH +L G      YGY+  G F+PQ+G  F+P ++L+DPYA+A+
Subjt:  QEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV

B9G434 Isoamylase 3, chloroplastic4.0e-1048.48Show/hide
Query:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG
        E  LD   NKTGD+WHV ++G   + +LYGY+  G     +G  FD S +LLDPYAK V  R  FG
Subjt:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG

D0TZF0 Isoamylase 1, chloroplastic4.7e-2761.25Show/hide
Query:  NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        + VT+E+ LDPL N+TG+VWHVF++G+   MLYGY+FDG F+P  G YFD S +++DPYAKAVISRGE+G  GP  +CWP
Subjt:  NRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

O04196 Isoamylase 1, chloroplastic1.4e-3475.31Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        QN+VT+EI+LDP  N+TG VWHVFL+GDF +MLYGY+FDGKFSP+EG Y+D S ILLDPYAKA+ISR EFG LGP+DNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

Q9M0S5 Isoamylase 3, chloroplastic6.2e-1148.48Show/hide
Query:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG
        E+ LDP  NKTGD WH+ ++      +LYGY+ DG    Q+G  FD S +LLDPYAK V     FG
Subjt:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG

Arabidopsis top hitse value%identityAlignment
AT1G03310.1 debranching enzyme 17.2e-0735.71Show/hide
Query:  EIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV---ISRGEFGAL
        E+ LDP  N+TGDVWH  +   +  + YGY+       +E    +   I+LDPYA  V   +S+   G+L
Subjt:  EIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV---ISRGEFGAL

AT1G03310.2 debranching enzyme 17.2e-0735.71Show/hide
Query:  EIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV---ISRGEFGAL
        E+ LDP  N+TGDVWH  +   +  + YGY+       +E    +   I+LDPYA  V   +S+   G+L
Subjt:  EIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAV---ISRGEFGAL

AT2G39930.1 isoamylase 19.7e-3675.31Show/hide
Query:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP
        QN+VT+EI+LDP  N+TG VWHVFL+GDF +MLYGY+FDGKFSP+EG Y+D S ILLDPYAKA+ISR EFG LGP+DNCWP
Subjt:  QNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWP

AT4G09020.1 isoamylase 34.4e-1248.48Show/hide
Query:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG
        E+ LDP  NKTGD WH+ ++      +LYGY+ DG    Q+G  FD S +LLDPYAK V     FG
Subjt:  EIRLDPLTNKTGDVWHVFLKG-DFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGGTTACCATTTACTTTGTGCAGAATAGAGTGACCCAGGAGATCAGGCTTGATCCCTTAACCAATAAAACTGGGGATGTCTGGCATGTATTTCTGAAGGGAGA
TTTTACTGAGATGCTTTATGGCTACAAATTTGATGGGAAATTTTCACCTCAGGAAGGATGCTACTTTGACCCTTCTCGGATTTTGTTAGATCCATATGCTAAAGCCGTTA
TTAGCAGAGGAGAGTTTGGTGCCTTGGGACCCAATGACAACTGTTGGCCCCCAAATGGCTGGCATGGTGCCCACCGTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTGGTTACCATTTACTTTGTGCAGAATAGAGTGACCCAGGAGATCAGGCTTGATCCCTTAACCAATAAAACTGGGGATGTCTGGCATGTATTTCTGAAGGGAGA
TTTTACTGAGATGCTTTATGGCTACAAATTTGATGGGAAATTTTCACCTCAGGAAGGATGCTACTTTGACCCTTCTCGGATTTTGTTAGATCCATATGCTAAAGCCGTTA
TTAGCAGAGGAGAGTTTGGTGCCTTGGGACCCAATGACAACTGTTGGCCCCCAAATGGCTGGCATGGTGCCCACCGTCAATGA
Protein sequenceShow/hide protein sequence
MALVTIYFVQNRVTQEIRLDPLTNKTGDVWHVFLKGDFTEMLYGYKFDGKFSPQEGCYFDPSRILLDPYAKAVISRGEFGALGPNDNCWPPNGWHGAHRQ