; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G15100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G15100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionisoamylase 1, chloroplastic
Genome locationClcChr06:26043653..26045870
RNA-Seq ExpressionClc06G15100
SyntenyClc06G15100
Gene Ontology termsGO:0005977 - glycogen metabolic process (biological process)
GO:0019156 - isoamylase activity (molecular function)
InterPro domainsIPR017853 - Glycoside hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28533.1 isoamylase 1 [Cucumis melo var. makuwa]7.9e-4876.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
XP_004149676.1 isoamylase 1, chloroplastic [Cucumis sativus]3.0e-4775.38Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYG+PIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
XP_008453530.1 PREDICTED: isoamylase 1, chloroplastic [Cucumis melo]7.9e-4876.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
XP_022134724.1 isoamylase 1, chloroplastic [Momordica charantia]3.3e-4674.62Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGP  SFRGVDN+VYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GDVLTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
XP_038879251.1 isoamylase 1, chloroplastic [Benincasa hispida]1.8e-4776.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNV+GNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GDVLTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
TrEMBL top hitse value%identityAlignment
A0A1S3BVW8 isoamylase 1, chloroplastic3.8e-4876.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
A0A5A7UQM5 Isoamylase 13.8e-4876.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
A0A5D3DXS8 Isoamylase 13.8e-4876.15Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
A0A6J1BZK5 isoamylase 1, chloroplastic1.6e-4674.62Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGP  SFRGVDN+VYYMLAPMGEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GDVLTTGSPLGN  +IDMISNDPVLQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
A0A6J1ICQ3 isoamylase 1, chloroplastic8.0e-4673.08Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNENGP  SFRGVDNNVYYMLAPMGEFYNYSGCG         VR FIVDCLRYWV E    G+   L        SLWDAVNVYGNPIE
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD LTTGSPLGN  +IDMISNDP+LQGVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
SwissProt top hitse value%identityAlignment
B2VJR7 Glycogen debranching enzyme7.8e-1450Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTE
        +DVVFNH+AE +ENGPT+S RG+DN  YY L   G + N++GCG     +        +DCLRYWV E
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTE
D0TZF0 Isoamylase 1, chloroplastic4.4e-4163.08Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVVFNHTAEGNE GP +SFRG+DN+ YYMLAP GEFYNYSGCG         VR FIVDCLRYWVTE    G+   L        SLWD VNVYG+P+E
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+ TTG+PL    +IDMISNDP+L  VK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
O04196 Isoamylase 1, chloroplastic1.3e-4063.08Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVV NHTAEGNE GP  SFRGVDN+VYYMLAP GEFYNYSGCG         VR FI+DCLRYWVTE    G+   L        SLWDA NVYG  +E
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTG+P+    +IDMISNDP+L+GVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
P0A4Y5 Glycogen operon protein GlgX homolog1.1e-1252.86Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMG-EFY-NYSGCGKHLTAIIQHVRMFIVDCLRYWVTE
        +DVV+NHTAEGN  GPTI+FRG+DN  YY L      FY +++G G  L A   H    I+D LRYWV E
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMG-EFY-NYSGCGKHLTAIIQHVRMFIVDCLRYWVTE
Q9M0S5 Isoamylase 3, chloroplastic5.4e-1538.76Show/hide
Query:  MDVVFNHTAEGNENGP-TISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTETARGWVSLVPCFYNDQSLWDAVNVYGNPIEG
        +DVV+NHT E ++  P T SFRG+DN VYYML P  +  N+SGCG  L      V   I+D LR+WVTE           ++ D   +D  +V       
Subjt:  MDVVFNHTAEGNENGP-TISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTETARGWVSLVPCFYNDQSLWDAVNVYGNPIEG

Query:  DVLTTGSPLGNTSMIDMISNDPVLQGVKV
           T GSPL    +I  I+ D VL   K+
Subjt:  DVLTTGSPLGNTSMIDMISNDPVLQGVKV
Arabidopsis top hitse value%identityAlignment
AT2G39930.1 isoamylase 19.1e-4263.08Show/hide
Query:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE
        MDVV NHTAEGNE GP  SFRGVDN+VYYMLAP GEFYNYSGCG         VR FI+DCLRYWVTE    G+   L        SLWDA NVYG  +E
Subjt:  MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTET-ARGW-VSLVPCFYNDQSLWDAVNVYGNPIE

Query:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
        GD+LTTG+P+    +IDMISNDP+L+GVK+
Subjt:  GDVLTTGSPLGNTSMIDMISNDPVLQGVKV
AT4G09020.1 isoamylase 33.8e-1638.76Show/hide
Query:  MDVVFNHTAEGNENGP-TISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTETARGWVSLVPCFYNDQSLWDAVNVYGNPIEG
        +DVV+NHT E ++  P T SFRG+DN VYYML P  +  N+SGCG  L      V   I+D LR+WVTE           ++ D   +D  +V       
Subjt:  MDVVFNHTAEGNENGP-TISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTETARGWVSLVPCFYNDQSLWDAVNVYGNPIEG

Query:  DVLTTGSPLGNTSMIDMISNDPVLQGVKV
           T GSPL    +I  I+ D VL   K+
Subjt:  DVLTTGSPLGNTSMIDMISNDPVLQGVKV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAGTATTCAATCACACAGCCGAGGGGAATGAAAATGGCCCCACTATTTCTTTCAGAGGTGTTGATAATAATGTGTATTACATGCTTGCACCAATGGGAGAGTT
CTATAATTATTCAGGATGTGGGAAACATTTAACTGCAATCATCCAGCATGTACGTATGTTCATTGTGGACTGCTTAAGATATTGGGTGACTGAAACTGCACGTGGATGGG
TTTCGCTTGTACCTTGCTTCTATAATGACCAGAGTCTGTGGGATGCAGTAAATGTGTATGGAAATCCAATAGAAGGTGACGTACTCACAACTGGTTCTCCTCTTGGCAAT
ACCTCCATGATTGACATGATAAGTAATGACCCAGTACTTCAAGGAGTGAAGGTGTTTACCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAGTATTCAATCACACAGCCGAGGGGAATGAAAATGGCCCCACTATTTCTTTCAGAGGTGTTGATAATAATGTGTATTACATGCTTGCACCAATGGGAGAGTT
CTATAATTATTCAGGATGTGGGAAACATTTAACTGCAATCATCCAGCATGTACGTATGTTCATTGTGGACTGCTTAAGATATTGGGTGACTGAAACTGCACGTGGATGGG
TTTCGCTTGTACCTTGCTTCTATAATGACCAGAGTCTGTGGGATGCAGTAAATGTGTATGGAAATCCAATAGAAGGTGACGTACTCACAACTGGTTCTCCTCTTGGCAAT
ACCTCCATGATTGACATGATAAGTAATGACCCAGTACTTCAAGGAGTGAAGGTGTTTACCCCTTAA
Protein sequenceShow/hide protein sequence
MDVVFNHTAEGNENGPTISFRGVDNNVYYMLAPMGEFYNYSGCGKHLTAIIQHVRMFIVDCLRYWVTETARGWVSLVPCFYNDQSLWDAVNVYGNPIEGDVLTTGSPLGN
TSMIDMISNDPVLQGVKVFTP