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Clc06G16115 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G16115
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S28
Genome locationClcChr06:26939614..26940655
RNA-Seq ExpressionClc06G16115
SyntenyClc06G16115
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2698.48Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7023246.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]1.2e-25100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]2.4e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022922062.1 40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]2.4e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A0A0LPR2 Uncharacterized protein5.8e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A1S3CD61 40S ribosomal protein S28-15.8e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1E226 40S ribosomal protein S28-1-like isoform X21.2e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X11.2e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1HTG7 40S ribosomal protein S28-15.8e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-21.2e-2389.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S281.4e-2490.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S282.3e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S282.3e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-13.1e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein2.2e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein2.2e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S288.2e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTA
CAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTA
GAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTT
CTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTATATTCGTCTTCACACACGATCAGAAACCCTAGTTATGTTAGTATTTGGCTCCTCTATAGTTACATTGGTCGATTCTGCAATCCGGCGGCTTGTCTA
CAATTCTACAAAGTTCTCTCCGTCCTCTTCCTCTTTCTCTCTCGTCTAAGTTTACTTTTCCTAAAACTTCAAATTAAGTTGTTCAAATTGGGAAGTGGAGCTGTA
GAAGTAGTAATTGGCATGGAATCCCAGATCAAGCATGCTGTGGTGGTGAAAGTGATGGGTAGAACTGGATCAAGGGGGCAAGTGACTCAAGTGAGAGTTAAGTTT
CTAGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGT
TGA
Protein sequenceShow/hide protein sequence
MGVYSSSHTIRNPSYVSIWLLYSYIGRFCNPAACLQFYKVLSVLFLFLSRLSLLFLKLQIKLFKLGSGAVEVVIGMESQIKHAVVVKVMGRTGSRGQVTQVRVKF
LDDQNRYIMRNVKGPVREGDILTLLESEREARRLR