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Clc06G16690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G16690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpentatricopeptide repeat-containing protein PNM1, mitochondrial
Genome locationClcChr06:27416912..27418560
RNA-Seq ExpressionClc06G16690
SyntenyClc06G16690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589597.1 Pentatricopeptide repeat-containing protein PNM1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.9e-0571.11Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA    S PLQLSLSHSFS+ESG++DV+QTSQ SLA+ELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
XP_004138218.1 pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucumis sativus]3.1e-0575.56Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA L FSSPL LSLSHSFSSES ++ V+QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
XP_008453300.1 PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Cucumis melo]4.3e-0780Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA L FSSPL LSLSHSFSSESG++DV+QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
XP_022921958.1 pentatricopeptide repeat-containing protein PNM1, mitochondrial-like [Cucurbita moschata]6.9e-0571.11Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA    S PLQLSLSHSFS+ESG++DV+QTSQ SLA+ELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
XP_038880042.1 pentatricopeptide repeat-containing protein PNM1, mitochondrial [Benincasa hispida]2.4e-0573.33Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HH A L +SSPL LSLSHSF SESGD+D++QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
TrEMBL top hitse value%identityAlignment
A0A0A0LPG5 Uncharacterized protein1.5e-0575.56Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA L FSSPL LSLSHSFSSES ++ V+QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
A0A1S3BVC3 pentatricopeptide repeat-containing protein PNM1, mitochondrial2.1e-0780Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA L FSSPL LSLSHSFSSESG++DV+QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
A0A5A7UTF6 Pentatricopeptide repeat-containing protein PNM12.1e-0780Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA L FSSPL LSLSHSFSSESG++DV+QTSQ SLASELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
A0A6J1E592 pentatricopeptide repeat-containing protein PNM1, mitochondrial-like3.3e-0571.11Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA    S PLQLSLSHSFS+ESG++DV+QTSQ SLA+ELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
A0A6J1JII6 pentatricopeptide repeat-containing protein PNM1, mitochondrial-like4.3e-0571.11Show/hide
Query:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
        +HHGA    S PLQLSLSHSFSSESG++DV+Q+SQ SLA+ELL D
Subjt:  KHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAGACAAAATGGCGGCTGATTCAGGTGAAATCTTCACACGGTTCCCTCTCTTGGGCATTGTTTGGAATCCCCAATTTACGAATAAAGCATCATGGGGCGACATT
GAGCTTTTCTTCTCCCTTGCAACTCTCACTTTCTCATTCCTTCTCCTCCGAATCCGGCGACGATGACGTGAATCAAACATCACAGCGATCACTTGCATCTGAGCTTCTCA
CTGATTTATCAACAGTAGTTCGTGATTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACAGACAAAATGGCGGCTGATTCAGGTGAAATCTTCACACGGTTCCCTCTCTTGGGCATTGTTTGGAATCCCCAATTTACGAATAAAGCATCATGGGGCGACATT
GAGCTTTTCTTCTCCCTTGCAACTCTCACTTTCTCATTCCTTCTCCTCCGAATCCGGCGACGATGACGTGAATCAAACATCACAGCGATCACTTGCATCTGAGCTTCTCA
CTGATTTATCAACAGTAGTTCGTGATTTATAA
Protein sequenceShow/hide protein sequence
MEQTKWRLIQVKSSHGSLSWALFGIPNLRIKHHGATLSFSSPLQLSLSHSFSSESGDDDVNQTSQRSLASELLTDLSTVVRDL