; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G17030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G17030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLYR motif-containing protein 4
Genome locationClcChr06:27678176..27678909
RNA-Seq ExpressionClc06G17030
SyntenyClc06G17030
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453246.1 PREDICTED: LYR motif-containing protein 4 [Cucumis melo]4.8e-3690Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

XP_011660289.1 LYR motif-containing protein 4 [Cucumis sativus]7.4e-3792.22Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA+PTRSEALSLLRSL+RTARHF DYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY PKVKSIMEAHR N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

XP_022134602.1 LYR motif-containing protein 4-like [Momordica charantia]1.7e-3383.33Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA PTR+EALSLLRSLLRTARHFCDYN+REY KRRA+DGFRHNRNLSDP SISSAYADG+AQLEVA+RQS VYS +APKVKSIM+ H  N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

XP_022932898.1 LYR motif-containing protein 4 [Cucurbita moschata]9.0e-3587.78Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL++PKVKSIMEAH TN
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

XP_038879775.1 LYR motif-containing protein 4-like [Benincasa hispida]3.0e-3894.44Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        M APTRSEALSLLRS LRTARHFCDYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIME HRTN
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

TrEMBL top hitse value%identityAlignment
A0A0A0LPH2 Uncharacterized protein3.6e-3792.22Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA+PTRSEALSLLRSL+RTARHF DYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY PKVKSIMEAHR N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

A0A1S3BV74 LYR motif-containing protein 42.3e-3690Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

A0A5A7UTC8 LYR motif-containing protein 42.3e-3690Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGKAQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

A0A6J1F322 LYR motif-containing protein 44.4e-3587.78Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL++PKVKSIMEAH TN
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

A0A6J1IC29 LYR motif-containing protein 44.4e-3587.78Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN
        MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGKAQLEVAKRQS VYSL++PKVKSIMEAH TN
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

SwissProt top hitse value%identityAlignment
B8JLQ0 LYR motif-containing protein 41.8e-0635.06Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA
        MA+ +R++ +SL R L++ ++ F  YN R Y  RR  DGFR N ++ +P ++       +  L V KRQ ++  LY+
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA

O46098 Protein bcn927.0e-0636.47Show/hide
Query:  TRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRT
        TR +A++L R+LLR +     YN R Y  R+  D FR NR+  D   I    A+G+  LE+ +RQ  +  LY+   K ++E  +T
Subjt:  TRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRT

Q6DCS1 LYR motif-containing protein 42.4e-0637.66Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA
        M+A +RS+ LSL + +LR ++ F  YN R Y  RR  D FR  +N+ D   I +     K  L V +RQ  +  +YA
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA

Q6Q560 Protein ISD112.8e-0737.84Show/hide
Query:  APTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY
        APTR + LSL +  ++ A  F +YN REY   +    FR N N  DP  + + + + K  L V KRQS +  +Y
Subjt:  APTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLY

Q8K215 LYR motif-containing protein 41.4e-0940.26Show/hide
Query:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA
        MAA +R++ L L R+++R ++HF  YN R Y  RR  D FR N+N+ DP  I +     K  LE+ +RQ  +  LY+
Subjt:  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYA

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein1.8e-2062.03Show/hide
Query:  SEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIME
        SE LSL R+LLR  R F DYNIREY+KRR LDGFR N+NL+DP  ++ AYA+ K QL VA+R   VY  Y PK K+IME
Subjt:  SEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCTCGTCACTTCTGCGATTACAACATCAGAGAGTACACCAAACGACGCGCCCT
CGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTCCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCTGTCTACT
CCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCTCATCGCACAAACTGA
mRNA sequenceShow/hide mRNA sequence
TTTAGTTCTAATGCCAAAGTAAGAGAATCTCTTCTTCGTCGTCGTTTGCTTCTTCCTTCCTTCTCTGTCCAACGAATCCCTAACTGTATAAAGTATAAACCTTTTTCAAC
AAACGATTCTACCTATCTTCTTCCTCGAGGTCCTTCGAAAATGGCGGCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCTCGTCACTTCT
GCGATTACAACATCAGAGAGTACACCAAACGACGCGCCCTCGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTCCATCCATCTCCTCCGCCTACGCCGACGGCAAG
GCTCAGCTTGAAGTTGCTAAAAGACAATCCGCTGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCTCATCGCACAAACTGAATACGGAAGCTCTTTTG
CCCTAATTTTTTGTAATTCTAATTCTATTATGACAGATTTCGTGAGTTAGGGTTTATTTCTGCTTCGCGGATCTTTACTTGATTGCCTTATCATACCTTTTTTTCTAAGA
ATTCAATAAATTGTTTGTTCTGTGAGCTTTTGTTTGTTTGTTTGTTTGAGTAATCAATCCCTGATTGTGGGATGGAAGTTGAAATATTTGGTGATGATGAACATGGTTAG
AACTCTTCTGGTTGGTTTTGATTTATTGGATTTGATGCACTAATCAATTTTTCTATCGATAAAGTCCAGTGGAA
Protein sequenceShow/hide protein sequence
MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN