; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc06G17150 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G17150
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHNH domain-containing protein
Genome locationClcChr06:27770974..27774559
RNA-Seq ExpressionClc06G17150
SyntenyClc06G17150
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR002711 - HNH endonuclease
IPR003615 - HNH nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453223.1 PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]3.6e-9794.02Show/hide
Query:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFT    DKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_008453224.1 PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]6.5e-9996.11Show/hide
Query:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_022933741.1 uncharacterized protein LOC111441065 [Cucurbita moschata]7.7e-10092.06Show/hide
Query:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        S+P D V TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

XP_023531696.1 uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo]5.9e-10092.06Show/hide
Query:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        S+P D V TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

XP_038878253.1 uncharacterized protein LOC120070538 [Benincasa hispida]3.5e-10095.56Show/hide
Query:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFD KAKAICW KADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS++NDVDTSELKGYSCD+KFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

TrEMBL top hitse value%identityAlignment
A0A0A0LUK3 HNHc domain-containing protein9.8e-10194.59Show/hide
Query:  LDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA
        LD VPTPMEATSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA
Subjt:  LDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTA

Query:  DNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED
        DNCQILQTRVNRFKS+K+DVDTSELKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Subjt:  DNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED

A0A1S3BVP6 uncharacterized protein LOC103494011 isoform X23.2e-9996.11Show/hide
Query:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A5A7UWI1 HNH endonuclease3.2e-9996.11Show/hide
Query:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        MEATSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  MEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A6J1EZW3 uncharacterized protein LOC1114410653.7e-10092.06Show/hide
Query:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        S+P D V TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

A0A6J1I7G1 uncharacterized protein LOC1114715093.7e-10092.06Show/hide
Query:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE
        S+P D V TPMEATSSSPSPTRSRGG R SGSG+G+ERPRFFD KAKAICWAKAD VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGE
Subjt:  SNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGE

Query:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
        STADNCQILQTRVNRFKSDK+DVDTS+LKGYSCDVKFTDKELD+IEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS
Subjt:  STADNCQILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein6.8e-7067.61Show/hide
Query:  TPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQI
        T     ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHP+RWRKD AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQI
Subjt:  TPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQI

Query:  LQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        LQTRVNRFKS + +VD + LK YSC ++FTDKELDVIEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Subjt:  LQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

AT3G47490.1 HNH endonuclease3.5e-3447.01Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELK
        SG G  +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVPYSKGG+ST +NCQ+LQ +VNR K +K D+  SEL 
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELK

Query:  GYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCR
          S   +   +++D+IE+  YG+V R      CR
Subjt:  GYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCR

AT3G47490.2 HNH endonuclease3.0e-1751.47Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSK
        SG G  +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVPYSK
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSK

AT3G47490.3 HNH endonuclease1.4e-3040.91Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQIL
        SG G  +  PR F    K  CW KA+ + GR P+RWR+D  GN+V ++   C GCLC +YDHIVPYS                    KGG+ST +NCQ+L
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQIL

Query:  QTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCR
        Q +VNR K +K D+  SEL   S   +   +++D+IE+  YG+V R      CR
Subjt:  QTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGCTCCAATCCGCTGGACGACGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAG
TGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGATCGCTGGCGTAAGGATGCCGCTG
GTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTTTGCTTTGAATACGATCACATTGTCCCCTACTCCAAAGGCGGCGAATCCACGGCGGATAATTGCCAG
ATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGATGTTGATACGTCTGAGTTAAAAGGCTATTCATGTGACGTCAAGTTTACTGATAAGGAGCTTGACGT
AATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGTTTGGCCCCTT
GCAAATTGCCATATAATGAAGATTCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGCTCCAATCCGCTGGACGACGTCCCGACTCCGATGGAAGCTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAG
TGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCTATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGATCGCTGGCGTAAGGATGCCGCTG
GTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTTTGCTTTGAATACGATCACATTGTCCCCTACTCCAAAGGCGGCGAATCCACGGCGGATAATTGCCAG
ATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGATGTTGATACGTCTGAGTTAAAAGGCTATTCATGTGACGTCAAGTTTACTGATAAGGAGCTTGACGT
AATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAATGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGTTTGGCCCCTT
GCAAATTGCCATATAATGAAGATTCTTTGTAACAACAAAGAAGACTTGAAACTAAAGCATGGTTGCCCCATTTGTGAAATCTCAGACGTCGTGGATTTGGCTAGAAGATC
ATCCACCATGGGTGAACTATTTTTTAATTGTTGAATGTTGTTTTGTTTAGTCTTGTTTGCTTTTGTTTTTACTCCCAAACAAAATTGTGGATATTATTATTAGTATTTAT
GTTTATATGTGATTAAGTAAATGACATTTTTTATGTTTTGCGAGTATTTATAAAATATGTCAAAAATATAGATGAATGTTTGTTATTGATGTCGAATTTGTCCATATACA
AATATATTGACTTGTTGATGGATATTTTAATTCTTAGATATAACTTGCATTAAATTTGTAAATTATTATTATTATATCATTGTTCATGGCTGCAGCTGCTCGAGTTCTGA
GAAGGCGTTTCTCCGTTGTTTGGGTTTTACATGTAGAAGTAGATCAACAAGCCCATCCAATGCACCTTAGCCTC
Protein sequenceShow/hide protein sequence
MIGSNPLDDVPTPMEATSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPDRWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQ
ILQTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDVIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL