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Clc06G17450 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G17450
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor PRE3-like
Genome locationClcChr06:28056937..28057596
RNA-Seq ExpressionClc06G17450
SyntenyClc06G17450
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.1e-3597.83Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]6.3e-3696.7Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022921825.1 transcription factor PRE3-like [Cucurbita moschata]1.4e-3593.41Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRH+QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_022987208.1 transcription factor PRE3-like [Cucurbita maxima]4.8e-3694.51Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH+QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]8.8e-38100Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like5.2e-3697.83Show/hide
Query:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRH QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like3.1e-3696.7Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAA VLQETCNYIR+LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1E6W2 transcription factor PRE3-like6.8e-3693.41Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSG SRITDDQINDLVSKLQQLLPEIRH+QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1IDH8 transcription factor ILI6-like4.4e-3594.51Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDK SAA VLQETCNYIR+LHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

A0A6J1JIT1 transcription factor PRE3-like2.3e-3694.51Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH+QSDKVSAAK+LQETCNYI+NLHREVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI65.4e-3080.43Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R   +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

F4JCN9 Transcription factor PRE43.6e-2670.65Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+  + +S KVSA++VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Q0DUR2 Transcription factor ILI65.4e-3080.43Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM
        MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R   +D+V +++VLQETCNYIR+LH+EVDDLSERLSELLATSD  +AQAAIIRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE64.1e-3081.52Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE36.4e-3181.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRHT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R + +SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRHT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.9e-3181.52Show/hide
Query:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL
        MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R  +SDKVSA+KVLQETCNYIRNLHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Subjt:  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.5e-3281.72Show/hide
Query:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRHT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R + +SDKVSAA+VLQ+TCNYIRNLHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Subjt:  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIRHT-QSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.8e-2367.74Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM
        MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI    +SDKVSA+KVLQETCNYIR LHREVD+LS+RLS+LL     D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 32.6e-2770.65Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ
        MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+  + +S KVSA++VLQETC+YIRNL +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.5e-2265.59Show/hide
Query:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM
        MS+RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI +  +SDK SA+KVLQETCNYIRNL+REVD+LSERLS+LL +   D+ +AA+IRSLLM
Subjt:  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCTAGATCTAGACAATCAGGTAGTTCAAGAATCACTGATGATCAAATTAATGATCTTGTTTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCCA
CACGCAATCCGATAAGGTTTCGGCAGCAAAAGTGTTGCAGGAGACGTGCAACTACATAAGAAACTTGCATAGAGAAGTGGATGATTTAAGTGAGAGACTTTCAGAGTTGT
TGGCAACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTCCAGTCTTCAAAAGAAAACCCATTACCTTCTACTTGAGTGATTTGCACACTGTCTCATCTCTCTTCATCTTCAAAATCAAAAAACCCTATTCATTATTCATA
ATGCAAACAAACCCCAAAATCACTTTGTTTAGTTAGTTCTTCTAATTAGTTGATCATTAACATTATTAATCACCCACTTACATATATACTTTACAAGAAGAAAGAGATGT
CAAGCAGAAGATCTAGATCTAGACAATCAGGTAGTTCAAGAATCACTGATGATCAAATTAATGATCTTGTTTCCAAGTTGCAACAACTTCTTCCTGAGATTCGCCACACG
CAATCCGATAAGGTTTCGGCAGCAAAAGTGTTGCAGGAGACGTGCAACTACATAAGAAACTTGCATAGAGAAGTGGATGATTTAAGTGAGAGACTTTCAGAGTTGTTGGC
AACATCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTACTTATGCAATAGAGATCAAAGTGGTATTTTTCCATATGACAAGATTT
Protein sequenceShow/hide protein sequence
MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ