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Clc06G19170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G19170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein indeterminate-domain 16
Genome locationClcChr06:29416243..29417396
RNA-Seq ExpressionClc06G19170
SyntenyClc06G19170
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039288 - Zinc finger protein SHOOT GRAVITROPISM 5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057771.1 protein indeterminate-domain 16 [Cucumis melo var. makuwa]1.8e-7995.91Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPIRP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        +EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_004138047.1 protein indeterminate-domain 16 [Cucumis sativus]4.9e-7493.71Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISLRPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQI
        MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEA   GSVDLQLSISLRPIRP  A GAECLFKYEEVMKPEAASCV+ALKWQAAEQI
Subjt:  MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISLRPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQI

Query:  RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_008464429.1 PREDICTED: protein indeterminate-domain 16 [Cucumis melo]6.0e-8096.49Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPIRP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_022921773.1 protein indeterminate-domain 16-like [Cucurbita moschata]3.5e-7290.75Show/hide
Query:  MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRL
        MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+E AGPGS+DLQLSIS+RPIRP    AEC+FKYEEVMKPEAASCVEALKWQAAEQIRL
Subjt:  MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRL

Query:  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        AAMEKAYAERVRELTKREIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

XP_038878928.1 protein indeterminate-domain 16 [Benincasa hispida]2.3e-7997.66Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSD FEAAGPGSVDLQLSISLRPIRPA   AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

TrEMBL top hitse value%identityAlignment
A0A0A0LRS8 Uncharacterized protein2.4e-7493.71Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISLRPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQI
        MEDEDQKELQLLPTPHSIASSS SH+SSRPSD SSLRFRSDP FEA   GSVDLQLSISLRPIRP  A GAECLFKYEEVMKPEAASCV+ALKWQAAEQI
Subjt:  MEDEDQKELQLLPTPHSIASSS-SHMSSRPSD-SSLRFRSDP-FEAAGPGSVDLQLSISLRPIRP-AAAGAECLFKYEEVMKPEAASCVEALKWQAAEQI

Query:  RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A1S3CN02 protein indeterminate-domain 162.9e-8096.49Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPIRP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A5A7UWD1 Protein indeterminate-domain 168.5e-8095.91Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPIRP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        +EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A5D3BFD1 Protein indeterminate-domain 162.9e-8096.49Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
        MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEA   GSVDLQLSISLRPIRP  AG ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

A0A6J1E4S8 protein indeterminate-domain 16-like1.7e-7290.75Show/hide
Query:  MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRL
        MEDEDQKELQLLPTPH+IA  SSSSHMSSRPS SS+RFRSDP+E AGPGS+DLQLSIS+RPIRP    AEC+FKYEEVMKPEAASCVEALKWQAAEQIRL
Subjt:  MEDEDQKELQLLPTPHSIA--SSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRL

Query:  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
        AAMEKAYAERVRELTKREIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Subjt:  AAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS

SwissProt top hitse value%identityAlignment
F4IPE3 Zinc finger protein SHOOT GRAVITROPISM 51.3e-0841.77Show/hide
Query:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Q9C9X7 Protein indeterminate-domain 141.6e-0644.44Show/hide
Query:  ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q F+
Subjt:  ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Q9FRH4 Protein indeterminate-domain 163.5e-0631.69Show/hide
Query:  RPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARA
        RPS+      + PF A+      L+L +S+   R  +A A    K E  +  E A+                  E   AE  R+  KR+IE+A+ +F +A
Subjt:  RPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARA

Query:  RQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        +++ E A+ E+EKA  ++E A +++++T MEITC SC+Q F+
Subjt:  RQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

Arabidopsis top hitse value%identityAlignment
AT1G68130.1 indeterminate(ID)-domain 141.1e-0744.44Show/hide
Query:  ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q F+
Subjt:  ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.1 C2H2-like zinc finger protein9.1e-1041.77Show/hide
Query:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.2 C2H2-like zinc finger protein9.1e-1041.77Show/hide
Query:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT2G01940.3 C2H2-like zinc finger protein9.1e-1041.77Show/hide
Query:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +++ ST M++TCQ+C+ +F+
Subjt:  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR

AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)1.7e-3253.22Show/hide
Query:  EDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAG--PGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLA
        + +  KELQLLP+P S  + S     RP+  +    ++   ++      +DL+LSISL  I  A          EE+  P     VEALKWQAAEQIRLA
Subjt:  EDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAG--PGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLA

Query:  AMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP
        A+EKAYAERVRELT+RE+E+AQ+EFARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Subjt:  AMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCATCGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCG
GTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTGAGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACG
AGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGAGCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGA
GAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGTGGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAG
AGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAATACAAGAGCCATCAGGCTGATGTTGGATGGTCATTGTATAAGAATGTAAACTCCACATCCACAATCATGGAAAAGAAAGGAGATGGGTAAATCGGTAATTTCATGA
GCCAATTTGTTATATATATAGGTGAAAGTTTCTGCCATTTCATTCAGAGAGTCTGTTTCCATTGTACTCAGAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAAAAAAAA
GAAGAAGAAAAAGAAAAATCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAGGAGTTGCAGCTTCTTCCGACGCCTCACTCCATAGCGTCAT
CGTCATCCCACATGTCGTCCCGCCCATCCGACTCGTCGTTACGTTTCCGGTCCGATCCATTCGAAGCGGCTGGTCCAGGATCGGTGGACTTGCAGCTATCAATAAGCCTG
AGGCCAATCCGACCGGCAGCGGCGGGGGCGGAGTGCTTGTTCAAGTACGAGGAGGTGATGAAGCCGGAGGCGGCGAGCTGTGTGGAGGCGCTGAAGTGGCAAGCGGCGGA
GCAAATTAGGCTGGCGGCGATGGAAAAGGCGTATGCGGAGAGAGTGAGAGAACTGACGAAGAGGGAAATAGAATTGGCGCAAACGGAATTTGCTAGGGCTCGACAGATGT
GGGAAAGGGCAAGAGAAGAAGTTGAAAAAGCGGAACGAATGAAAGAAAGAGCCACTCGCCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGG
TTTCGGCCTTCTTAATTATATCGTTAATCATTATTTACCTCATTAATTACCCTTCCATTTTCCCATATTTTCTTCTACCCTTAATTATTAAGCGTTATATGCAGAGTTTC
TTTTAATTAAGTCTCTGCCTTGGTCTGTCTTTTCTTTTTTTCAATTAATAATCTTTTAAATTAAGAAAAATAGAGAGAAAATATGGGTTAATTATTAGTCGGATCATCAT
CATCTTCATCAACAATCACACAATAAATAAATCAAAAGTATGGAGTTCAAATTCAATTTTGTTTTGGAAACTTGAATTTGGTGTCCTGGTTTCTTGTTTAGTAAATTAAG
TTTGTATGATATTATAATATATATTAATAATCATATGCACGGTTTGTTTATGCC
Protein sequenceShow/hide protein sequence
MEDEDQKELQLLPTPHSIASSSSHMSSRPSDSSLRFRSDPFEAAGPGSVDLQLSISLRPIRPAAAGAECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVR
ELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS