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Clc06G19185 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G19185
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein transport protein Sec61 subunit gamma
Genome locationClcChr06:29433492..29434045
RNA-Seq ExpressionClc06G19185
SyntenyClc06G19185
Gene Ontology termsGO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0071261 - Ssh1 translocon complex (cellular component)
GO:0008320 - protein transmembrane transporter activity (molecular function)
InterPro domainsIPR023391 - Protein translocase SecE domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7005343.1 hypothetical protein CFC21_020468 [Triticum aestivum]8.5e-1771.88Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR  ++ +   +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
VAH72522.1 unnamed protein product [Triticum turgidum subsp. durum]8.5e-1770.31Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR  ++ +   +FTKVA RTAIGF+VMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
VAI56164.1 unnamed protein product [Triticum turgidum subsp. durum]6.5e-1773.44Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR     L   +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
VAI92799.1 unnamed protein product [Triticum turgidum subsp. durum]2.9e-1775Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR G S     +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
VAI92800.1 unnamed protein product [Triticum turgidum subsp. durum]1.1e-1675Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR G S     +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
TrEMBL top hitse value%identityAlignment
A0A446PE33 Uncharacterized protein4.1e-1770.31Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR  ++ +   +FTKVA RTAIGF+VMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
A0A446V9P9 Uncharacterized protein7.0e-1771.64Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMS---FLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR  ++   FL  ++FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMS---FLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
A0A446W7V8 Uncharacterized protein3.2e-1773.44Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR     L   +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
A0A446YW31 Uncharacterized protein5.4e-1775Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR G S     +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
A0A446YWH6 Uncharacterized protein1.4e-1775Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR G S     +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
SwissProt top hitse value%identityAlignment
P0DI74 Protein transport protein Sec61 subunit gamma-12.7e-1876.56Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDAIDSVVDPLRDFAKDSIRLVKRCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
P0DI75 Protein transport protein Sec61 subunit gamma-22.7e-1876.56Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDAIDSVVDPLRDFAKDSIRLVKRCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
P38385 Protein transport protein Sec61 subunit gamma1.8e-1771.88Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
Q7Z1B8 Protein transport protein Sec61 subunit gamma4.7e-1051.56Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MD +   ++P R FAKDSIRLVKRC KPDR         +F K+A  TAIGF +MGF+G  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
Q9SMP2 Protein transport protein Sec61 subunit gamma-35.7e-1667.19Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        M+AIDS +DPLRDFAK S+RLV+RCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
Arabidopsis top hitse value%identityAlignment
AT3G48570.1 secE/sec61-gamma protein transport protein4.1e-1767.19Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        M+AIDS +DPLRDFAK S+RLV+RCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
AT4G24920.1 secE/sec61-gamma protein transport protein2.0e-1976.56Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDAIDSVVDPLRDFAKDSIRLVKRCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
AT5G50460.1 secE/sec61-gamma protein transport protein2.0e-1976.56Show/hide
Query:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV
        MDAIDSVVDPLRDFAKDSIRLVKRCHKPDR         +FTKVA RTAIGFVVMGFVG  V +
Subjt:  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGCATTCGTCTCGTCAAAAGATGCCACAAGCCGGATCGCAATGGCATGTCTTTCCTTCA
CCTCCTCCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTAGGGGTTGAAGTCTCCGTTGAAAGGCATTCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGCATTCGTCTCGTCAAAAGATGCCACAAGCCGGATCGCAATGGCATGTCTTTCCTTCA
CCTCCTCCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTAGGGGTTGAAGTCTCCGTTGAAAGGCATTCTGGTTGA
Protein sequenceShow/hide protein sequence
MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGVEVSVERHSG