CuGenDBv2

Gene ID	Clc06G19230
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	ClcChr06:29453622..29455357
RNA-Seq Expression	Clc06G19230
Synteny	Clc06G19230
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

5.5e-86

76.11

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTD+S GG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+AYESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

1.2e-85

76.11

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+AYESGTS HASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

1.2e-77

69.64

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        ME+KPT++LAL QTTQELA++GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TAT+A   L+IASPNGPS HS NGVVNGDASSEST+HH DTSSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ                                                 +A+AYESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHL NLR+ELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

1.0e-84

74.49

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+A+ESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

7.4e-83

74.9

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEKPTNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+T TTATSGL IASPNGPSSHS NGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A AYESGTSG  SPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLS+LR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

2.6e-86

76.11

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK TNVLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTD+S GG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+AYESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

5.9e-86

76.11

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+AYESGTS HASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

5.9e-86

76.11

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEK T VLAL QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTD+SSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+AYESGTS HASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+ELV+KNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

5.0e-85

74.49

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+A+ESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

5.0e-85

74.49

Show/hide

Query:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG
        MEEKPTNVL+L QTTQELAM+GIKHLEETIESAFQILYSMNDELCNPTLWSTTS+TATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTDTSSGG
Subjt:  MEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQK                                                 A+A+ESGTSGHASPADQ
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQ

Query:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        SEIDKLEQHLSNLR+EL++KNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  SEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

2.9e-37

44.07

Show/hide

Query:  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEA
        TTQELAM+G K LEETIE+AFQI+ +MNDELCNP+LWST++T ++ AT+       NG +  SA+      A+ + TSHH++++ GGG G  G   L+EA
Subjt:  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLS
         +RYKNSV +LRA+LAAIPNSQK K                               SE+                     +G  SP  + EI+KLE+   
Subjt:  RVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLS

Query:  NLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  NLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

2.0e-38

44.07

Show/hide

Query:  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEA
        TTQELAM+G K LEETIE+AFQI+ +MNDELCNP+LWST++T ++ AT+       NG +  SA+      A+ + TSHH++++ GGG G  G   L+EA
Subjt:  TTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDTSSGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLS
         +RYKNSV +LRA+LAAIPNSQK K                               SE+                     +G  SP  + EI+KLE+   
Subjt:  RVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHAEAYESGTSGHASPADQSEIDKLEQHLS

Query:  NLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV
        +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  NLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTTGCCCGCGCAGTAGCAACACAGGAGCATCTGTTTTTTCTTCTGGAAACATACAAAT
GGAAGAGAAACCCACTAATGTTTTGGCTCTTGCCCAGACAACTCAAGAGCTTGCAATGGACGGCATCAAGCATCTCGAGGAAACCATAGAATCCGCTTTCCAGATCCTCT
ACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTACAACGGCAACGACGGCTACTTCTGGTTTAACAATTGCCAGCCCTAATGGTCCATCTTCG
CATTCCGCTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGC
CCGTGTTCGCTACAAGAATTCTGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCAATTCTCTATCCAAGTT
CATTAGCCAGTGTTTCTCATTTCGAATTTGCTTTTTATTTGGAAAGAATCGAGATCGATTCGGAGATATTGGGTTCCCCCAGAGACTACAATGAACCTGGTTCTCATGCA
GAAGCATATGAATCGGGCACGAGTGGTCATGCATCGCCTGCAGATCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAGGGAACTTGTGATGAAGAA
TTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSRYVRVVKETDLKSVGLCPRSSNTGASVFSSGNIQMEEKPTNVLALAQTTQELAMDGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTTATTATSGLTIASPNGPSS
HSANGVVNGDASSESTSHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKVKLLTDLPILYPSSLASVSHFEFAFYLERIEIDSEILGSPRDYNEPGSHA
EAYESGTSGHASPADQSEIDKLEQHLSNLRRELVMKNLHIKLLIDQLRDLVADVSTWQSPCSV

Clc06G19230 (gene) of Watermelon (cordophanus) v2 genome