CuGenDBv2

Gene ID	Clc06G19480
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Exosome complex component RRP4-like protein
Genome location	ClcChr06:29582064..29587296
RNA-Seq Expression	Clc06G19480
Synteny	Clc06G19480
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0000178 - exosome (RNase complex) (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR003441 - NAC domain IPR012340 - Nucleic acid-binding, OB-fold IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4 IPR036093 - NAC domain superfamily IPR036612 - K Homology domain, type 1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ98430.1 exosome complex component RRP4-like protein [Cucumis melo var. makuwa]

7.4e-118

53.42

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MR + +     ++ RL+ A++ LESLSSKAN DASV V DT+P +YEDGVLKGHGTLDLN EVV TICGV+ERVNKLIYVR+L+  YK E+GDIVV RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRLDI+YSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP
        EQYGIDLILGCN FIWIG+HVDST+D MIEDQV+K EQ G                +    +HE + +    L   + + R  +  R++  L        
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP

Query:  TEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSE
         EEELVFEYLKCKVFSSALPASIIPEI+GVWNLDPWDIP   GG   +EEKY+FSKK      EAEEYNNN+N   GI+GWS+SGYWKAR  EKEIVSSE
Subjt:  TEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSE

Query:  IGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIF--CNKFNDDHII-----QRRLHYSISST--
         GV LMGMK TLDF      + + RK KKTGWVMH+YRL + PH            ++   NKWVLC I    NK   DHII     +RRL YSISST  
Subjt:  IGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIF--CNKFNDDHII-----QRRLHYSISST--

Query:  -------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA
                H +H+  IT + A SDD+ DSVSSTASSSSTSA
Subjt:  -------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA

XP_038879414.1 exosome complex component RRP4 homolog [Benincasa hispida]

1.4e-87

64.24

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MRGLQISLNHTQ IRLQKARE LESLSSKANSDASVIVADT+PLNYEDGVLKGHGTLDLN EVVATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRLDINYSQ AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN-------------------------GFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTA
        EQYGIDLILGCN FIWIGEHVDSTEDMMIEDQV K+EQ                          GFI+TVEVIMET+SLSIS N++VHEMLGSEFFVLTA
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN-------------------------GFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTA

Query:  EKEVERRTSRKRMMRG
        EKEVERR       RG
Subjt:  EKEVERRTSRKRMMRG

XP_038879890.1 NAC domain-containing protein 83-like [Benincasa hispida]

4.1e-84

68.73

Show/hide

Query:  MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPT---GAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYW
        MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIP+I+GVWNLDPWDIP    G GGG REEEKY+FSKK A  + +    NNN+NMGIVGWSRSGYW
Subjt:  MRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPT---GAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYW

Query:  KARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK-FNDDHIIQRRLHY
        KAR WEKEI+SS+IGV L+GMKKTLDF S          TKKTGWVMH+YRLQL+PH S+     +   TNL NN WVLCRIFCNK FN  H+  R LHY
Subjt:  KARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK-FNDDHIIQRRLHY

Query:  SISSTNHQDHLLS---ITPNALSDDDDSVSSTASSSSTSAA--------TIPNHPFPPF
        SISSTNHQ   L     T  ALSDDDDS+SSTASSSSTSAA        T  ++PFPPF
Subjt:  SISSTNHQDHLLS---ITPNALSDDDDSVSSTASSSSTSAA--------TIPNHPFPPF

XP_038882864.1 exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]

3.7e-85

60.74

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MRGLQISLNHTQKIRLQ+A+E LESLSSKANSDASVIVADT+PLNYEDGVLKGHGTLDLN EV+ATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRLDINYSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN
        EQYGIDLILGCN FIWIGEHVD TEDMMI+DQ++KSEQ                                        GFI+TVEVIME +SLSIS+N++
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN

Query:  VHEMLGSEFFVLTAEKEVERRTSRKR
        VHEMLGSEF VLTAEKEVERRTS K+
Subjt:  VHEMLGSEFFVLTAEKEVERRTSRKR

XP_038882865.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida]

3.7e-85

60.74

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MRGLQISLNHTQKIRLQ+A+E LESLSSKANSDASVIVADT+PLNYEDGVLKGHGTLDLN EV+ATICGV+ERVNKLIYVRAL+  YK EVGDIVV RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRLDINYSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN
        EQYGIDLILGCN FIWIGEHVD TEDMMI+DQ++KSEQ                                        GFI+TVEVIME +SLSIS+N++
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN

Query:  VHEMLGSEFFVLTAEKEVERRTSRKR
        VHEMLGSEF VLTAEKEVERRTS K+
Subjt:  VHEMLGSEFFVLTAEKEVERRTSRKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKA1 Exosome complex component RRP4-like protein isoform X2

4.1e-82

59.01

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRAL--QLYKLEVGDIVVERV
        MRGLQ+SLNHTQKIRL++A+E L+SLSSK NSDASV+VADT+PLNYEDGVLKGHGTLDLN EVVA+ICGV+ERVNKLIYVRAL  +LYK EVGDIVV RV
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRAL--QLYKLEVGDIVVERV

Query:  SEVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------
        +EVA KRWRLDINYSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              
Subjt:  SEVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------

Query:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN----------------------------------GFIITVEVIMETISLSISVNMNVHEM
        L+QYGIDLILGCN FIWIGEHVD  ED MIED VDK EQ                                   GFI+TVEVIME ++LSIS+N++VHEM
Subjt:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN----------------------------------GFIITVEVIMETISLSISVNMNVHEM

Query:  LGSEFFVLTAEKEVERRTSRKR
        LGSEF VLTAEKEVERR+S K+
Subjt:  LGSEFFVLTAEKEVERRTSRKR

A0A5D3BF59 Exosome complex component RRP4-like protein

3.6e-118

53.42

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MR + +     ++ RL+ A++ LESLSSKAN DASV V DT+P +YEDGVLKGHGTLDLN EVV TICGV+ERVNKLIYVR+L+  YK E+GDIVV RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRLDI+YSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP
        EQYGIDLILGCN FIWIG+HVDST+D MIEDQV+K EQ G                +    +HE + +    L   + + R  +  R++  L        
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVIMETISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEP

Query:  TEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSE
         EEELVFEYLKCKVFSSALPASIIPEI+GVWNLDPWDIP   GG   +EEKY+FSKK      EAEEYNNN+N   GI+GWS+SGYWKAR  EKEIVSSE
Subjt:  TEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDN--MGIVGWSRSGYWKARRWEKEIVSSE

Query:  IGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIF--CNKFNDDHII-----QRRLHYSISST--
         GV LMGMK TLDF      + + RK KKTGWVMH+YRL + PH            ++   NKWVLC I    NK   DHII     +RRL YSISST  
Subjt:  IGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIF--CNKFNDDHII-----QRRLHYSISST--

Query:  -------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA
                H +H+  IT + A SDD+ DSVSSTASSSSTSA
Subjt:  -------NHQDHLLSITPN-ALSDDD-DSVSSTASSSSTSA

A0A6J1EXY1 exosome complex component RRP4 homolog

6.4e-83

58.46

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MRGLQ+SLN TQKIRLQ+A E LES+SSKANSDASV+VADT+PLNYEDGVLKGHGTLDLN EVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQLMDSTCGAFFKKMMLFV--------------LE
        EVA KRWRLDINYSQ+AVLMLSSM LPDGIQ    ++ E+ +                F   G  LQ      G   +  +L V              LE
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQLMDSTCGAFFKKMMLFV--------------LE

Query:  QYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMNV
        QYGIDLILGCN FIWIGEHVD TEDMM+ED ++KSEQ                                        GFI++VEVIMET+SLSIS+N++V
Subjt:  QYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMNV

Query:  HEMLGSEFFVLTAEKEVERRTSRKR
        HEMLGSEF VLTAEKE ERRTS K+
Subjt:  HEMLGSEFFVLTAEKEVERRTSRKR

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X1

8.3e-83

59.51

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MR LQISLN TQKIRLQ+A E+LES+SSKANSDASVIVADT+PLNY+DGVLKGHGTLDLN EVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L
        EVA KRWRL+INYSQ+AVLMLSSM LPDGIQ    ++ E+ +  SIF                G  LQ      G   +  +L V              L
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISR-------------GGELQLMDSTCGAFFKKMMLFV--------------L

Query:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN
        EQYGIDLI GCN FIWIGEHVD TEDMMIEDQV+KSEQ                                        GFI+TVEVIMET+SLS S+N+N
Subjt:  EQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMN

Query:  VHEMLGSEFFVLTAEKEVERRTSRKR
        VHEMLGSEF VLTAEKE ERRTS K+
Subjt:  VHEMLGSEFFVLTAEKEVERRTSRKR

A0A6J1K7S0 exosome complex component RRP4 homolog

5.4e-82

58.15

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MRGLQ+SLN TQKIRLQ+A E LES+SSKANSDASV+VADT+PLNYEDGVLKGHGTLDL  EVVATICGV+ERVNKLIYVRAL+  YK EVGDI+V RV+
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQLMDSTCGAFFKKMMLFV--------------LE
        EVA KRWRLDINYSQ+AVLMLSSM LPDGIQ    ++ E+ +                F   G  LQ      G   +  +L V              LE
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSI------------FISRGGELQLMDSTCGAFFKKMMLFV--------------LE

Query:  QYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMNV
        QYGIDLILGCN FIWIGEHVD TEDMM+ED ++KSEQ                                        GFI++VEVIMET+SLSIS+N++V
Subjt:  QYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQN---------------------------------------GFIITVEVIMETISLSISVNMNV

Query:  HEMLGSEFFVLTAEKEVERRTSRKR
        HEMLGSEF VLTAEKE ERRTS K+
Subjt:  HEMLGSEFFVLTAEKEVERRTSRKR

SwissProt top hits

e value

%identity

Alignment

A0SPJ6 NAC transcription factor NAM-B2

2.1e-22

39.23

Show/hide

Query:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE
        LPPGFRF PT+EELV  YLK K     LP +II E+D ++  DPW++P  A  G  E+E Y FS +D        +Y N         + SGYWKA   +
Subjt:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE

Query:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNN----TNTNTNTNLENNKWVLCRIF
        K I++S  G   +G+KK L F       G   K  KT W+MHEYRL      + ++     T  + + +L  + WVLCRI+
Subjt:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNN----TNTNTNTNLENNKWVLCRIF

O22798 NAC domain-containing protein 41

9.9e-25

41.54

Show/hide

Query:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV
        +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE D V   DPWD+P     G  E E Y FS +      EA+  N N +    
Subjt:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV

Query:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK
        G   SGYWKA   +K+I   ++   ++GMKKTL F       G      +T WV+HEYRL   Q    Y  N N           WVLCR+F  K
Subjt:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK

Q9FY93 NAC domain-containing protein 83

3.0e-29

42.47

Show/hide

Query:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE
        LPPGFRF PT+EELV +YLK KV SS LPASIIPE D V   DPWD+P     G  E+E+Y FS +      EA+  N N +    G   SGYWKA   +
Subjt:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE

Query:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFC-----NKFNDDHIIQRRLHYSI
        K +V+S  G  ++G+KKTL F       GS     +T W+MHEYRL   P  S     N           WVLCRIF      NK +DD    R L ++ 
Subjt:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFC-----NKFNDDHIIQRRLHYSI

Query:  SSTNHQDHLLSITPNALSD
        ++ N  D +  IT +   D
Subjt:  SSTNHQDHLLSITPNALSD

Q9LD44 NAC transcription factor 56

7.1e-23

36.92

Show/hide

Query:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE
        LPPGFRF PT+EELV  YLK K  S+ LP +II E+D ++  DPW++P  A  G  E+E Y FS +D        +Y N         + SGYWKA   +
Subjt:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE

Query:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNKFNDDHIIQRRLHYSISSTN
        K +++S+ G   +G+KK L F      SG   K  K+ W+MHEYRL + +P+         N   +L  + WVLCRI+       H+   + H  I    
Subjt:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNKFNDDHIIQRRLHYSISSTN

Query:  HQDHLLSITPNALS
          D++    P +LS
Subjt:  HQDHLLSITPNALS

Q9ZVT7 Exosome complex component RRP4 homolog

2.3e-61

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MR LQ+ L+ TQK+R ++A E L+SLSS ANSDASVIV D++P+N++D  LKGHGT +++ E++AT+CGV+ERV+KL+YVR L+  YK EVGDIVV RV 
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFI------------SRGGELQLM--DSTCGAFFKKMMLFV--------------
        EVA KRWR+++N++Q+ VLMLSSM +PDGIQ    S+ E+ +  +IF+               G LQL       G   K  +L V              
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFI------------SRGGELQLM--DSTCGAFFKKMMLFV--------------

Query:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---------SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG
        +E  GIDLI+GCN FIW+GEHV+  + M I+DQ D+          EQ+                       GF +T+EVIMET++LS S N+++H+MLG
Subjt:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---------SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG

Query:  SEFFVLTAEKEVERRTSRKR
        SEF V+ AE E ERR ++++
Subjt:  SEFFVLTAEKEVERRTSRKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G03360.1 ribosomal RNA processing 4

1.6e-62

Show/hide

Query:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS
        MR LQ+ L+ TQK+R ++A E L+SLSS ANSDASVIV D++P+N++D  LKGHGT +++ E++AT+CGV+ERV+KL+YVR L+  YK EVGDIVV RV 
Subjt:  MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQL-YKLEVGDIVVERVS

Query:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFI------------SRGGELQLM--DSTCGAFFKKMMLFV--------------
        EVA KRWR+++N++Q+ VLMLSSM +PDGIQ    S+ E+ +  +IF+               G LQL       G   K  +L V              
Subjt:  EVASKRWRLDINYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFI------------SRGGELQLM--DSTCGAFFKKMMLFV--------------

Query:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---------SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG
        +E  GIDLI+GCN FIW+GEHV+  + M I+DQ D+          EQ+                       GF +T+EVIMET++LS S N+++H+MLG
Subjt:  LEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDK---------SEQN-----------------------GFIITVEVIMETISLSISVNMNVHEMLG

Query:  SEFFVLTAEKEVERRTSRKR
        SEF V+ AE E ERR ++++
Subjt:  SEFFVLTAEKEVERRTSRKR

AT2G33480.1 NAC domain containing protein 41

7.1e-26

41.54

Show/hide

Query:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV
        +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE D V   DPWD+P     G  E E Y FS +      EA+  N N +    
Subjt:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV

Query:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK
        G   SGYWKA   +K+I   ++   ++GMKKTL F       G      +T WV+HEYRL   Q    Y  N N           WVLCR+F  K
Subjt:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK

AT2G33480.2 NAC domain containing protein 41

2.1e-25

40.72

Show/hide

Query:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV
        +E+R+S + R +  LPPGFRF PT+EELV +YL+ KV    LPAS+IPE D V   DPWD+P     G  E E Y FS +      EA+  N N +    
Subjt:  VERRTS-RKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIV

Query:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK
        G   SGYWKA   +K+I   ++   ++GMKKTL F       G      +T WV+HEYRL              +   +L N  WVLCR+F  K
Subjt:  GWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNK

AT3G15510.1 NAC domain containing protein 2

5.1e-24

36.92

Show/hide

Query:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE
        LPPGFRF PT+EELV  YLK K  S+ LP +II E+D ++  DPW++P  A  G  E+E Y FS +D        +Y N         + SGYWKA   +
Subjt:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE

Query:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNKFNDDHIIQRRLHYSISSTN
        K +++S+ G   +G+KK L F      SG   K  K+ W+MHEYRL + +P+         N   +L  + WVLCRI+       H+   + H  I    
Subjt:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRL-QLQPHYSYSNNTNTNTNTNLENNKWVLCRIFCNKFNDDHIIQRRLHYSISSTN

Query:  HQDHLLSITPNALS
          D++    P +LS
Subjt:  HQDHLLSITPNALS

AT5G13180.1 NAC domain containing protein 83

2.1e-30

42.47

Show/hide

Query:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE
        LPPGFRF PT+EELV +YLK KV SS LPASIIPE D V   DPWD+P     G  E+E+Y FS +      EA+  N N +    G   SGYWKA   +
Subjt:  LPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKDAEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWE

Query:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFC-----NKFNDDHIIQRRLHYSI
        K +V+S  G  ++G+KKTL F       GS     +T W+MHEYRL   P  S     N           WVLCRIF      NK +DD    R L ++ 
Subjt:  KEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIFC-----NKFNDDHIIQRRLHYSI

Query:  SSTNHQDHLLSITPNALSD
        ++ N  D +  IT +   D
Subjt:  SSTNHQDHLLSITPNALSD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAGGTTTACAGATTTCCTTGAATCACACCCAAAAAATTCGGCTTCAAAAAGCCCGAGAAATGCTCGAGTCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTCTTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATAGAGAAGTAGTTGCCACTATTTGTGGAGTGATTGAGCGAG
TAAATAAGCTAATCTATGTACGTGCCTTACAATTATATAAACTGGAGGTTGGTGATATCGTGGTGGAACGTGTTTCAGAGGTTGCTTCAAAACGTTGGAGATTGGATATA
AATTATAGCCAAAATGCTGTTTTGATGCTTTCTTCGATGACCTTGCCTGATGGTATTCAGGTTTTAGAGAAATCCCTTTTGGAAATTATGATTAATTGTAGTATTTTTAT
TTCTAGAGGAGGCGAACTGCAGTTAATGGACTCAACATGCGGAGCATTTTTTAAGAAAATGATGTTATTTGTTTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCA
ATCGATTTATCTGGATTGGGGAGCATGTTGATTCTACAGAGGACATGATGATAGAAGATCAAGTTGATAAATCTGAACAAAATGGTTTTATAATAACAGTAGAAGTCATA
ATGGAGACGATTAGTCTAAGTATTTCTGTGAACATGAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTGTCCTCACGGCAGAAAAAGAAGTTGAACGACGTACTTCAAG
AAAGAGAATGATGAGAGGATTGCCACCTGGTTTTCGGTTTGAGCCGACGGAAGAAGAACTTGTATTTGAGTATCTTAAATGCAAAGTGTTCTCCTCTGCCTTGCCTGCTT
CTATCATTCCAGAGATCGATGGCGTTTGGAATTTGGATCCTTGGGATATTCCTACAGGCGCAGGCGGTGGTGGGCGGGAGGAAGAGAAATACATATTCAGCAAGAAGGAC
GCGGAGGCGGAGGCGGAGGCGGAGGAATATAACAATAATGATAATATGGGAATAGTTGGATGGAGTCGGAGTGGGTACTGGAAGGCGAGAAGGTGGGAGAAGGAAATAGT
AAGTAGTGAAATTGGAGTTCCATTGATGGGGATGAAGAAGACTCTGGATTTCTGTAGCATTGGAAGCAGCAGCGGCAGCAAGAGGAAGACGAAGAAGACGGGGTGGGTGA
TGCATGAGTACCGCCTTCAACTCCAACCACATTATTCATACTCCAACAATACTAATACTAATACTAATACTAATTTGGAGAACAACAAGTGGGTTCTTTGCCGAATCTTT
TGCAACAAATTCAATGATGATCATATTATTCAACGCCGCCTTCATTATTCTATTTCTTCCACAAACCATCAGGATCACCTCCTCAGCATTACCCCCAACGCCCTCTCCGA
CGACGATGATTCCGTTTCCTCCACCGCCTCATCCTCTTCCACCTCCGCCGCTACAATCCCCAACCATCCTTTTCCCCCTTTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRGLQISLNHTQKIRLQKAREMLESLSSKANSDASVIVADTLPLNYEDGVLKGHGTLDLNREVVATICGVIERVNKLIYVRALQLYKLEVGDIVVERVSEVASKRWRLDI
NYSQNAVLMLSSMTLPDGIQVLEKSLLEIMINCSIFISRGGELQLMDSTCGAFFKKMMLFVLEQYGIDLILGCNRFIWIGEHVDSTEDMMIEDQVDKSEQNGFIITVEVI
METISLSISVNMNVHEMLGSEFFVLTAEKEVERRTSRKRMMRGLPPGFRFEPTEEELVFEYLKCKVFSSALPASIIPEIDGVWNLDPWDIPTGAGGGGREEEKYIFSKKD
AEAEAEAEEYNNNDNMGIVGWSRSGYWKARRWEKEIVSSEIGVPLMGMKKTLDFCSIGSSSGSKRKTKKTGWVMHEYRLQLQPHYSYSNNTNTNTNTNLENNKWVLCRIF
CNKFNDDHIIQRRLHYSISSTNHQDHLLSITPNALSDDDDSVSSTASSSSTSAATIPNHPFPPF

Clc06G19480 (gene) of Watermelon (cordophanus) v2 genome