CuGenDBv2

Gene ID	Clc06G19640
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Rubredoxin-like domain-containing protein
Genome location	ClcChr06:29644592..29645806
RNA-Seq Expression	Clc06G19640
Synteny	Clc06G19640
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function)
InterPro domains	IPR024934 - Rubredoxin-like domain IPR024935 - Rubredoxin domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138023.1 uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus]

4.4e-73

84.62

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS+SASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+V+K+ N+FDVRKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

XP_008464376.1 PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo]

2.0e-73

85.21

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MASVSASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+VNK+ N+FD+RKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

XP_022921625.1 uncharacterized protein LOC111429830 isoform X1 [Cucurbita moschata]

3.1e-66

81.18

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS SASSL FHLPP PHSK   EDGGAD +SM  GS S R SLKSSF SPLR+IPS R     A AA PKFSMRVASKQAYICRDCGYIYNDRTPFEKL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPI-AAAVGVVALVGLYLYLN
        PD YFCPVCGAPKRRFRPYEQSV K+ N+FDVRKARK QIQKDEA+GKVLPI AAAVG+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPI-AAAVGVVALVGLYLYLN

XP_023516579.1 uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo]

3.6e-67

81.07

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS SASSL FHLPP PHSK   EDGGAD  SM  GS S R SLKSSF SPLR+IPS R     A AA PKFSMRVASKQAYICRDCGYIYNDRTPFEKL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PD YFCPVCGAPKRRFRPYEQSV K+ N+FDVRKARK QIQKDEA+GKVLPIAAAVG++ALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

XP_038880712.1 uncharacterized protein LOC120072320 isoform X1 [Benincasa hispida]

2.2e-72

86.75

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Query:  MASVSASSLRFHLPPKPHSKEDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDK
        MASVSASSL FHLP KP SKEDGGAD NSMF GSTS RLSLKSSF SPLRKIP   T  S AAAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KLPDK
Subjt:  MASVSASSLRFHLPPKPHSKEDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDK

Query:  YFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        YFCPVCGAPKRRFRPYEQSV K+AN+FDVRKARK +IQKDEA+GKVLPIAAAVG+VALVGLYLYLN
Subjt:  YFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNF5 Rubredoxin-like domain-containing protein

2.1e-73

84.62

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS+SASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+V+K+ N+FDVRKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

A0A1S3CLS9 uncharacterized protein LOC103502280 isoform X1

9.6e-74

85.21

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MASVSASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+VNK+ N+FD+RKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

A0A5A7UPF0 Rubredoxin family protein

9.6e-74

85.21

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MASVSASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+VNK+ N+FD+RKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

A0A6J1E6B5 uncharacterized protein LOC111429830 isoform X1

1.5e-66

81.18

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS SASSL FHLPP PHSK   EDGGAD +SM  GS S R SLKSSF SPLR+IPS R     A AA PKFSMRVASKQAYICRDCGYIYNDRTPFEKL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPI-AAAVGVVALVGLYLYLN
        PD YFCPVCGAPKRRFRPYEQSV K+ N+FDVRKARK QIQKDEA+GKVLPI AAAVG+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPI-AAAVGVVALVGLYLYLN

E5GBM0 Electron transporter

9.6e-74

85.21

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Query:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL
        MASVSASSL FHLPPKPH K   EDGG D NSMFL S S RLSLKSSF SPLRKIPSLR  NSV AAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSASSLRFHLPPKPHSK---EDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN
        PDKYFCPVCGAPKRRFRPYEQ+VNK+ N+FD+RKARK QIQKDEA+GKVLPIAAA+G+VALVGLYLYLN
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLN

SwissProt top hits

e value

%identity

Alignment

O26258 Probable rubredoxin

1.4e-05

41.07

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Query:  VASKQAYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPYE
        V++ + Y CR CGYIY+             TPFE LP+ + CP CGA K+ F+P +
Subjt:  VASKQAYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPYE

P04170 Rubredoxin-1

8.2e-06

48.84

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Query:  QAYICRDCGYIY----NDRTPFEKLPDKYFCPVCGAPKRRFRP
        Q Y+C  CGY Y    +D  PF++LPD + CPVCG  K +F P
Subjt:  QAYICRDCGYIY----NDRTPFEKLPDKYFCPVCGAPKRRFRP

P24297 Rubredoxin

2.4e-05

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Query:  YICRDCGYIYND-----------RTPFEKLPDKYFCPVCGAPKRRFRPYE
        ++C+ CGYIY++            T FE+LPD + CP+CGAPK  F   E
Subjt:  YICRDCGYIYND-----------RTPFEKLPDKYFCPVCGAPKRRFRPYE

P58992 Rubredoxin-1

3.5e-04

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Query:  AYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPY
        +++C +CGYIY+              PF+KLPD + CPVC  PK +F  +
Subjt:  AYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPY

Q9AL94 Rubredoxin

2.0e-04

41.18

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Query:  YICRDCGYIY-----------NDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ
        Y+C  CGYIY           N  T FE +PD + CP+CG  K +F P E+
Subjt:  YICRDCGYIY-----------NDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G17170.1 rubredoxin family protein

2.4e-08

40.32

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Query:  AGPKFSMRVASKQ----AYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVNK
        A P+F  ++   Q     +IC DCG+IY     F++ PD Y CP C APK+RF  Y+ +  K
Subjt:  AGPKFSMRVASKQ----AYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVNK

AT5G51010.1 Rubredoxin-like superfamily protein

1.9e-42

63.78

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Query:  SLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQK
        +L+ S F P   +  L    S++ ++ P+FSMRV+SKQAYICRDCGYIYNDRTPF+KLPD YFCPVC APKRRFR Y   V+K+ ND DVRKARK ++Q+
Subjt:  SLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVNKDANDFDVRKARKTQIQK

Query:  DEAVGKVLPIAAAVGVVALVGLYLYLN
        DEAVGK LPI  AVGV+AL  LY Y+N
Subjt:  DEAVGKVLPIAAAVGVVALVGLYLYLN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTCCGTTTCAGCTTCTTCTCTCAGATTCCACCTACCACCGAAGCCACATTCCAAGGAAGACGGCGGCGCTGATAGCAACTCCATGTTTTTGGGCTCTACCTCCAA
ACGCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAAGATTCCTTCTTTAAGGACGCCAAACTCTGTTGCTGCTGCCGCTGGCCCCAAGTTCTCCATGCGCGTCG
CTTCCAAACAAGCCTATATCTGCCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGTCTGCGGAGCTCCTAAG
CGACGATTTAGACCTTATGAACAATCTGTGAATAAAGATGCTAACGATTTTGATGTGAGGAAGGCGAGAAAGACGCAGATCCAGAAAGATGAAGCTGTTGGGAAGGTGCT
GCCTATTGCTGCTGCAGTGGGAGTCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAGGCGCCTTCTAGATCGAGTGGCTTGCTCACTGACGAGGGCTTAA

mRNA sequence

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Protein sequence

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MASVSASSLRFHLPPKPHSKEDGGADSNSMFLGSTSKRLSLKSSFFSPLRKIPSLRTPNSVAAAAGPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPK
RRFRPYEQSVNKDANDFDVRKARKTQIQKDEAVGKVLPIAAAVGVVALVGLYLYLNRRLLDRVACSLTRA

Clc06G19640 (gene) of Watermelon (cordophanus) v2 genome