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Clc06G19690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G19690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr06:29682294..29682948
RNA-Seq ExpressionClc06G19690
SyntenyClc06G19690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038878672.1 auxin response factor 2B [Benincasa hispida]2.0e-5063.41Show/hide
Query:  MLSIQSNAARRYHDKPISTFLFNRNYHFLLQRRYPITRRHLLTPSLFPTNYCLPFLPTTFSLLPSFTHFLSNSPPLFLLPSPL-EKQKIPSIFHPTTVAD
        MLSIQSNAARRYHD P  TFLF RNY+ LLQRRYPITRRHLLTPSL P+ YCLP     FSLL SFTHF     PLF     L   +K  +IFHPTTV+D
Subjt:  MLSIQSNAARRYHDKPISTFLFNRNYHFLLQRRYPITRRHLLTPSLFPTNYCLPFLPTTFSLLPSFTHFLSNSPPLFLLPSPL-EKQKIPSIFHPTTVAD

Query:  SCREKAKATKSQVQAQPQAQAQAQTALQRRCRRRYRHPQPRVSFLPIT-----SLNSLSP---PWGFS-PLSSLLPRVFHLPSLLSLFCMTLTNFLPTSE
        SCR+K K          Q  +   ++   RCR  Y HPQPRVSF PIT     SLNSLSP   PWGFS PLS LLPRVF LPSLLS FCMTLTN LPTSE
Subjt:  SCREKAKATKSQVQAQPQAQAQAQTALQRRCRRRYRHPQPRVSFLPIT-----SLNSLSP---PWGFS-PLSSLLPRVFHLPSLLSLFCMTLTNFLPTSE

Query:  ICHQI
        ICH++
Subjt:  ICHQI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAGCATCCAATCCAACGCTGCCCGTAGATACCACGACAAACCCATTTCCACGTTTCTATTCAATCGTAATTACCATTTTCTCTTACAACGCCGTTACCCTATCAC
ACGCCGACACCTCCTAACGCCGTCTCTCTTTCCTACAAATTATTGTCTTCCCTTCCTACCCACAACCTTCTCTCTCCTCCCTTCCTTCACCCATTTCCTTTCCAATTCAC
CCCCACTCTTCCTTCTCCCGTCTCCCCTAGAAAAGCAAAAGATCCCATCCATATTCCATCCCACTACTGTTGCAGACAGTTGTAGAGAGAAAGCCAAAGCAACCAAATCC
CAAGTTCAGGCTCAGCCTCAGGCTCAGGCTCAGGCCCAGACTGCTCTTCAACGCAGATGCAGACGGCGGTATCGCCACCCGCAACCTAGAGTTTCCTTTCTTCCGATTAC
CTCTCTCAATTCCCTTTCCCCTCCATGGGGATTCTCTCCTCTTTCCTCCTTACTACCTAGGGTTTTCCATCTTCCTTCTCTTCTTTCCCTCTTTTGCATGACACTTACCA
ATTTCCTACCTACCTCCGAGATCTGTCATCAGATTCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAAGCATCCAATCCAACGCTGCCCGTAGATACCACGACAAACCCATTTCCACGTTTCTATTCAATCGTAATTACCATTTTCTCTTACAACGCCGTTACCCTATCAC
ACGCCGACACCTCCTAACGCCGTCTCTCTTTCCTACAAATTATTGTCTTCCCTTCCTACCCACAACCTTCTCTCTCCTCCCTTCCTTCACCCATTTCCTTTCCAATTCAC
CCCCACTCTTCCTTCTCCCGTCTCCCCTAGAAAAGCAAAAGATCCCATCCATATTCCATCCCACTACTGTTGCAGACAGTTGTAGAGAGAAAGCCAAAGCAACCAAATCC
CAAGTTCAGGCTCAGCCTCAGGCTCAGGCTCAGGCCCAGACTGCTCTTCAACGCAGATGCAGACGGCGGTATCGCCACCCGCAACCTAGAGTTTCCTTTCTTCCGATTAC
CTCTCTCAATTCCCTTTCCCCTCCATGGGGATTCTCTCCTCTTTCCTCCTTACTACCTAGGGTTTTCCATCTTCCTTCTCTTCTTTCCCTCTTTTGCATGACACTTACCA
ATTTCCTACCTACCTCCGAGATCTGTCATCAGATTCCCTAG
Protein sequenceShow/hide protein sequence
MLSIQSNAARRYHDKPISTFLFNRNYHFLLQRRYPITRRHLLTPSLFPTNYCLPFLPTTFSLLPSFTHFLSNSPPLFLLPSPLEKQKIPSIFHPTTVADSCREKAKATKS
QVQAQPQAQAQAQTALQRRCRRRYRHPQPRVSFLPITSLNSLSPPWGFSPLSSLLPRVFHLPSLLSLFCMTLTNFLPTSEICHQIP