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Clc06G19730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc06G19730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitovirus RNA-dependent RNA polymerase
Genome locationClcChr06:29700403..29700630
RNA-Seq ExpressionClc06G19730
SyntenyClc06G19730
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER39083.1 mitovirus RNA-dependent RNA polymerase [Striga asiatica]6.0e-0878.38Show/hide
Query:  KKELGVEIILLVNPHMDPFPSRGSHPDHCNIGKFTSP
        KK L VE++LL+NPHMD FPSRGSHPDH NIGK TSP
Subjt:  KKELGVEIILLVNPHMDPFPSRGSHPDHCNIGKFTSP
TrEMBL top hitse value%identityAlignment
A0A5A7Q1R4 Mitovirus RNA-dependent RNA polymerase2.9e-0878.38Show/hide
Query:  KKELGVEIILLVNPHMDPFPSRGSHPDHCNIGKFTSP
        KK L VE++LL+NPHMD FPSRGSHPDH NIGK TSP
Subjt:  KKELGVEIILLVNPHMDPFPSRGSHPDHCNIGKFTSP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACAGACAAACGAAGGAAGGAACCATGGAAAGACTTGACCCATTTCTTATCTTTCTCTTTGATTGGCCTCGATGGAGAGGAAGAATCTACATCGATCACGATGC
CAAGAAAGAGTTGGGAGTTGAAATCATCCTTCTCGTGAACCCACATATGGACCCATTTCCGAGTAGGGGCAGCCACCCAGATCATTGCAACATTGGAAAGTTCACCAGCC
CAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACAGACAAACGAAGGAAGGAACCATGGAAAGACTTGACCCATTTCTTATCTTTCTCTTTGATTGGCCTCGATGGAGAGGAAGAATCTACATCGATCACGATGC
CAAGAAAGAGTTGGGAGTTGAAATCATCCTTCTCGTGAACCCACATATGGACCCATTTCCGAGTAGGGGCAGCCACCCAGATCATTGCAACATTGGAAAGTTCACCAGCC
CAACCTAA
Protein sequenceShow/hide protein sequence
MEHRQTKEGTMERLDPFLIFLFDWPRWRGRIYIDHDAKKELGVEIILLVNPHMDPFPSRGSHPDHCNIGKFTSPT