; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G00370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G00370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCST complex subunit STN1
Genome locationClcChr07:387429..389834
RNA-Seq ExpressionClc07G00370
SyntenyClc07G00370
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0004712 - protein serine/threonine/tyrosine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0106310 - protein serine kinase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]1.1e-7186.16Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI
        MNQ++  SLYHTHIKLLGFDLNSL Q++SSSSSDAVSFSR GYAVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI

Query:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        +GNMATHFA+QIRVGIV RVRG+ SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRL L
Subjt:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

XP_022967373.1 CST complex subunit STN1 [Cucurbita maxima]1.5e-7188.39Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI
        MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR G+AVSC EIVGVVVSRDLKPNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI

Query:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        +GNMATHFA+QIRVGIV RVRGK SSYRGVVQITVSDVVVE+DPNAEILHWLD M
Subjt:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]2.3e-7287.42Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI
        MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR GYAVSC E+VGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI

Query:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        +GNMATHFA+QIRVGIV RVRGK SSYRGVVQITVSDVVVE+DPNAEILHWLD MRL L
Subjt:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

XP_038887265.1 CST complex subunit STN1 isoform X1 [Benincasa hispida]7.4e-7982.72Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR
        MNQRQRLSLYHTHIKLLGFD+NSLNQ +SSSSSSDAVSFSRNGYAVSC+EIVGVVVS DLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR

Query:  IMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQVAIEYRGRAGSNLLDGYDEKQRSRWTNFS
        IMGN+ATHFA+QIRVGIV RVRGK SSYRGVVQITVSDVVVE+DPNAEILHWLDSMR RLAQV              GY + QRS W + +
Subjt:  IMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQVAIEYRGRAGSNLLDGYDEKQRSRWTNFS

XP_038887266.1 CST complex subunit STN1 isoform X2 [Benincasa hispida]1.0e-7593.59Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR
        MNQRQRLSLYHTHIKLLGFD+NSLNQ +SSSSSSDAVSFSRNGYAVSC+EIVGVVVS DLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQ-NSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVR

Query:  IMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        IMGN+ATHFA+QIRVGIV RVRGK SSYRGVVQITVSDVVVE+DPNAEILHWLDSM
Subjt:  IMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein9.8e-6985.09Show/hide
Query:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV
        MNQR+R   SLY TH+KLL FDLNSLNQ   +SSSD+VSFSR GYAVSCTEIVGVVV RDLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH  DV
Subjt:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV

Query:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        RI+G+MATHFA+QIRVGIVVRVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Subjt:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

A0A1S3BLT5 CST complex subunit STN11.0e-7086.96Show/hide
Query:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV
        MNQRQR   SLY TH+KLLGFDLNSLNQN   SSSD+VSFSR GYAVSCTEIVGVVV RDLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDV
Subjt:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV

Query:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        RI+ +MATHFA+QIRVGIVVRVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Subjt:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

A0A5D3E3H2 CST complex subunit STN11.0e-7086.96Show/hide
Query:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV
        MNQRQR   SLY TH+KLLGFDLNSLNQN   SSSD+VSFSR GYAVSCTEIVGVVV RDLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDV
Subjt:  MNQRQR--LSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDV

Query:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        RI+ +MATHFA+QIRVGIVVRVRGK SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRL +
Subjt:  RIMGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN15.5e-7286.16Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI
        MNQ++  SLYHTHIKLLGFDLNSL Q++SSSSSDAVSFSR GYAVSC EIVGVVV RDLKPNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI

Query:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL
        +GNMATHFA+QIRVGIV RVRG+ SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRL L
Subjt:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRL

A0A6J1HUX0 CST complex subunit STN17.2e-7288.39Show/hide
Query:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI
        MNQ++  SLYHTHIKLLGFDLNSL Q+SSSSSSDAVSFSR G+AVSC EIVGVVVSRDLKPNRFL+FSVDDGT CV CILWLNHLTSPYFASRHQPDVRI
Subjt:  MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRI

Query:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        +GNMATHFA+QIRVGIV RVRGK SSYRGVVQITVSDVVVE+DPNAEILHWLD M
Subjt:  MGNMATHFASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q9LMK5 CST complex subunit STN15.8e-3450.67Show/hide
Query:  SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATH
        SL  TH KL+  D+  L Q+ + S+S ++     G  VS  EIVG +VSRDL P +FLKF VDDGT CV C++WLN LTS YF+      + ++ + A  
Subjt:  SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATH

Query:  FASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRL
         A+QIR+G V RVRG+  SYRGV+QIT +  V E DPNAEILHWL+ ++L
Subjt:  FASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRL

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein4.1e-3550.67Show/hide
Query:  SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATH
        SL  TH KL+  D+  L Q+ + S+S ++     G  VS  EIVG +VSRDL P +FLKF VDDGT CV C++WLN LTS YF+      + ++ + A  
Subjt:  SLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATH

Query:  FASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRL
         A+QIR+G V RVRG+  SYRGV+QIT +  V E DPNAEILHWL+ ++L
Subjt:  FASQIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRL

AT2G24490.1 replicon protein A23.7e-0424.39Show/hide
Query:  SSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGV
        SS +      NG +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G  VR+ G   +++G 
Subjt:  SSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGV

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A23.7e-0424.39Show/hide
Query:  SSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGV
        SS +      NG +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G  VR+ G   +++G 
Subjt:  SSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFASQIRVGIVVRVRGKFSSYRGV

Query:  VQITVSDVVVEDDPNAEILHWLD
         Q+ V  V    D N    H+++
Subjt:  VQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACGGCAACGCCTTTCCCTCTACCACACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTTTC
TTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTACCG
CTTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCC
CAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGA
AATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGAA
GCCGGTGGACAAATTTCTCATGA
mRNA sequenceShow/hide mRNA sequence
CGATGAACCAACGGCAACGCCTTTCCCTCTACCACACCCACATCAAGCTGCTTGGTTTCGACCTTAATTCCCTCAACCAAAATTCCTCTTCTTCTTCTTCCGATGCAGTT
TCTTTCTCTCGCAATGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCTCAAACCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGTAC
CGCTTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCCGCCATCAGCCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCAT
CCCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGGGGGAAATTTAGCAGCTATAGGGGAGTGGTGCAGATTACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCT
GAAATTCTGCATTGGTTGGATTCTATGAGGTTAAGGCTAGCTCAGGTGGCTATAGAATACAGAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAG
AAGCCGGTGGACAAATTTCTCATGATTTGATGGGCTACAATGGAGAAAAACAAGGGCTATCAATTTATCTTCGTTTTTAATTAGGCCTACTCTTATTAGAAAATTAAATA
AATAAAGTAAAGGCCTACTCCCAGTATATTTTCCACCTTAACTTGAATTGAATAACACTTGATTTCATGTGTAACACCGAGATCGTTGAAGTAGAATTTGTATTGTAAAT
TCGAGAATATTTCGGTGGATAAGATATTGACTAATATTTGCTAATAATAAATAAATATGATCGATAT
Protein sequenceShow/hide protein sequence
MNQRQRLSLYHTHIKLLGFDLNSLNQNSSSSSSDAVSFSRNGYAVSCTEIVGVVVSRDLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNMATHFAS
QIRVGIVVRVRGKFSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLRLAQVAIEYRGRAGSNLLDGYDEKQRSRWTNFS