; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G00620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G00620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSignal recognition particle 9 kDa protein
Genome locationClcChr07:632750..635637
RNA-Seq ExpressionClc07G00620
SyntenyClc07G00620
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0045900 - negative regulation of translational elongation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR009018 - Signal recognition particle, SRP9/SRP14 subunit
IPR039432 - SRP9 domain
IPR039914 - Signal recognition particle SRP9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571487.1 Signal recognition particle 9 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]7.0e-4295.51Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGP+VDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

XP_004154105.1 signal recognition particle 9 kDa protein [Cucumis sativus]9.2e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]2.4e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

XP_023554094.1 signal recognition particle 9 kDa protein-like [Cucurbita pepo subsp. pepo]2.4e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]5.4e-4295.51Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVY+ASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LIQ2 Signal recognition particle 9 kDa protein4.4e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

A0A1S3BLU0 Signal recognition particle 9 kDa protein4.4e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

A0A5D3E2L2 Signal recognition particle 9 kDa protein4.4e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

A0A6J1HI87 Signal recognition particle 9 kDa protein1.2e-4296.63Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

A0A6J1HSA1 Signal recognition particle 9 kDa protein4.4e-4295.51Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTD+RECLKFKTDQAQDAKKMEKL+NIFFTLM+RGPDVDISEVTGKDQ
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

SwissProt top hitse value%identityAlignment
O04438 Signal recognition particle 9 kDa protein1.8e-4086.52Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFF LM+RGPDVDISEV+GK+Q
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

P21262 Signal recognition particle 9 kDa protein4.2e-1346.58Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLM
        M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTDD  CL ++TDQAQD KK+EK ++    LM
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLM

P49458 Signal recognition particle 9 kDa protein4.2e-1350Show/hide
Query:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLM
        +W+EF   + +L+ +DP   R  +KYRH DG L +KVTDD  CL +KTDQAQD KK+EK ++    LM
Subjt:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLM

Q55GL2 Signal recognition particle 9 kDa protein1.1e-1650.7Show/hide
Query:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTL
        +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT+D   LKF+TD+  D K+++++N++FF L
Subjt:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTL

Q9SMU7 Signal recognition particle 9 kDa protein4.7e-4187.64Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTD++ECLKFKTDQAQ+AKKMEKLNNIFFTLM+RGPDVD+SEVTGK+Q
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ

Arabidopsis top hitse value%identityAlignment
AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit3.4e-4287.64Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTD++ECLKFKTDQAQ+AKKMEKLNNIFFTLM+RGPDVD+SEVTGK+Q
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTACATAGCTTCGTGGGATGAATTTGTCGAGCGTTCTGTACAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGAT
GGGAAACTGGTTCTTAAGGTCACCGATGACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCGAAGAAGATGGAAAAACTCAACAACATATTCTTC
ACTCTGATGTCCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGACCAGGAAGGGGGAGGAAGCAATGACTTCACATTGACTACTGCATGGATAGAT
TTTGCACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTACATAGCTTCGTGGGATGAATTTGTCGAGCGTTCTGTACAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGAT
GGGAAACTGGTTCTTAAGGTCACCGATGACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCGAAGAAGATGGAAAAACTCAACAACATATTCTTC
ACTCTGATGTCCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGACCAGGAAGGGGGAGGAAGCAATGACTTCACATTGACTACTGCATGGATAGAT
TTTGCACATTGA
Protein sequenceShow/hide protein sequence
MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFTLMSRGPDVDISEVTGKDQEGGGSNDFTLTTAWID
FAH