CuGenDBv2

Gene ID	Clc07G01090
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Nucleolar protein 10
Genome location	ClcChr07:1189471..1197705
RNA-Seq Expression	Clc07G01090
Synteny	Clc07G01090
Gene Ontology terms	GO:0001522 - pseudouridine synthesis (biological process) GO:0006364 - rRNA processing (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0030515 - snoRNA binding (molecular function)
InterPro domains	IPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10 IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF2292707.1 hypothetical protein GH714_027182 [Hevea brasiliensis]

2.4e-18

88.89

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK
        + YTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQQPPPK G+
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK

KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

XP_008447412.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]

2.4e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]

2.4e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

XP_022963952.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata]

3.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGLV QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHD2 Nucleolar protein 10

1.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

A0A2G9GIP1 Nucleolar protein 10

1.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

A0A2P2IS35 Nucleolar protein 10

1.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

A0A6A6KVP9 Nucleolar protein 10

1.1e-18

88.89

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK
        + YTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQQPPPK G+
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK

A0A7J7CYK9 Nucleolar protein 10

1.1e-18

94.12

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Query:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
        + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Subjt:  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK

SwissProt top hits

e value

%identity

Alignment

Q54J26 H/ACA ribonucleoprotein complex subunit 3

1.4e-13

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Query:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        QR YT KKESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQPP
Subjt:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP10

2.0e-12

74.47

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Query:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
        +R YT  K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ

Q6DRH5 H/ACA ribonucleoprotein complex subunit 3

5.3e-13

70.59

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Query:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        +R YT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Subjt:  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein

5.5e-18

77.19

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Query:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        C   E  ++ YTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 3

4.5e-12

64.81

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Query:  EYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        E   R YT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  EYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Arabidopsis top hits

e value

%identity

Alignment

AT2G20490.1 nucleolar RNA-binding Nop10p family protein

3.9e-19

77.19

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Query:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        C   E  ++ YTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

AT2G20490.2 nucleolar RNA-binding Nop10p family protein

3.6e-17

75.44

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Query:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP
        C   E  ++ YTT KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Subjt:  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP

Sequences

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CDS sequence

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ATGAGAGTCCAAACAACTAGACAACCCAATCTAGGACCCGCCCTTAGTCTGTCTGCCGTTCATCTCCTCGCCTGGCGTTGGTCCTCCGTCACCCTCGCCGTTCGTTTAGT
GCCGCACCACCGCCGTTCTCCGTCGCGCCGCCGGACGTCCTGCACCAAAGTTGAGTATTATCAACGATTCTACACCACAAAGAAGGAATCACCTCTAGGTTTGGTCACCC
AATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATACTCTAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAAATT
GGAAAAATTACAACTCATGAGAATTCGTCTCTTTGCATAACTAAGGTTTATCCAATTGACACGTGGAAACTACGGAAGTTTTGA

mRNA sequence

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Protein sequence

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MRVQTTRQPNLGPALSLSAVHLLAWRWSSVTLAVRLVPHHRRSPSRRRTSCTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKI
GKITTHENSSLCITKVYPIDTWKLRKF

Clc07G01090 (gene) of Watermelon (cordophanus) v2 genome