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Clc07G01562 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G01562
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationClcChr07:1645037..1647220
RNA-Seq ExpressionClc07G01562
SyntenyClc07G01562
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]8.3e-1385.42Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+LQK ILAID SPDPE E+DKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]1.6e-1183.33Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+L+K ILAID S DPE ELDKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]1.6e-1183.33Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+L+K ILAID S DPE ELDKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
XP_031743374.1 uncharacterized protein LOC101208978 isoform X3 [Cucumis sativus]8.3e-1385.42Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+LQK ILAID SPDPE E+DKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]7.0e-1283.33Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIH+ LN ERLQKLILAID SPDPE ELDKAMEDEAF IFS+K+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein4.0e-1385.42Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+LQK ILAID SPDPE E+DKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X17.6e-1283.33Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+L+K ILAID S DPE ELDKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X27.6e-1283.33Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEIHN LNDE+L+K ILAID S DPE ELDKAMEDEAFRIFSSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
A0A5D3CJI3 Uncharacterized protein1.7e-1185.11Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSK
        ASSSEIHN LNDE+L+K ILAID S DPE ELDKAMEDEAFRIFSSK
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSK
A0A6J1JZX2 zinc finger HIT domain-containing protein 31.3e-1181.25Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
        ASSSEI N+LNDE+L+ LI AID SPDPEIELDKAMEDEAFRI SSK+
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein3.9e-0861.22Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKVL
        ASSSEI  +L DE LQKLI +ID S +P  ELD+AM  EAFR F+ K+L
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKVL
AT4G28820.2 HIT-type Zinc finger family protein3.9e-0861.22Show/hide
Query:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKVL
        ASSSEI  +L DE LQKLI +ID S +P  ELD+AM  EAFR F+ K+L
Subjt:  ASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTACAATCTAGGTTTTTATGCATCTTTCATACAGCATCTTCCTCAGAAATACACAATAGTTTGAATGATGAGAGACTCCAGAAGCTCATCCTTGCCATCGATGG
TTCACCTGATCCCGAAATTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGGTACTATTTTTAGGGCAACATATCATCTATCATTGGCTCG
AAGCCCCAATGATCACAGATGGAGGAGGGAAAAAATTAGCTTTGGGACGCCATCCAAGCACTCAGCTGCAATGTTTGATGGCGATAAATGTGCTAAGTCTTGAGATGACA
TATGATTTTCTTGTCTTTTCTTTACAAGTAGCCTTCTCTTTCTTTAATGAAGAAAACAGTATTCAAATACTACATAGGAATCTGTCTCATTTCACTTGTTTGAACACTCT
TCGCCGTCATGCCTTTTTTTCTTCTTGTACAGCCTTCTTTGCCTTCTTGAAATTCCAATACTTGATGACATTTGTTAGTCCAAAAACTTCAATCCATAAACCCGGAAACA
AAACAAAGTGCATTCCCTTTGGTCAAAGAATATCTTTGGTCATAACAAATTCCTCCAAGTTGACATCATCTGCCAATGTCACCCTTGATGTGTGTATCCGTAAATCAGAG
TTCTCAAGTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTTACAATCTAGGTTTTTATGCATCTTTCATACAGCATCTTCCTCAGAAATACACAATAGTTTGAATGATGAGAGACTCCAGAAGCTCATCCTTGCCATCGATGG
TTCACCTGATCCCGAAATTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGGTACTATTTTTAGGGCAACATATCATCTATCATTGGCTCG
AAGCCCCAATGATCACAGATGGAGGAGGGAAAAAATTAGCTTTGGGACGCCATCCAAGCACTCAGCTGCAATGTTTGATGGCGATAAATGTGCTAAGTCTTGAGATGACA
TATGATTTTCTTGTCTTTTCTTTACAAGTAGCCTTCTCTTTCTTTAATGAAGAAAACAGTATTCAAATACTACATAGGAATCTGTCTCATTTCACTTGTTTGAACACTCT
TCGCCGTCATGCCTTTTTTTCTTCTTGTACAGCCTTCTTTGCCTTCTTGAAATTCCAATACTTGATGACATTTGTTAGTCCAAAAACTTCAATCCATAAACCCGGAAACA
AAACAAAGTGCATTCCCTTTGGTCAAAGAATATCTTTGGTCATAACAAATTCCTCCAAGTTGACATCATCTGCCAATGTCACCCTTGATGTGTGTATCCGTAAATCAGAG
TTCTCAAGTTGTTAG
Protein sequenceShow/hide protein sequence
MNLQSRFLCIFHTASSSEIHNSLNDERLQKLILAIDGSPDPEIELDKAMEDEAFRIFSSKVLFLGQHIIYHWLEAPMITDGGGKKLALGRHPSTQLQCLMAINVLSLEMT
YDFLVFSLQVAFSFFNEENSIQILHRNLSHFTCLNTLRRHAFFSSCTAFFAFLKFQYLMTFVSPKTSIHKPGNKTKCIPFGQRISLVITNSSKLTSSANVTLDVCIRKSE
FSSC