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Clc07G01690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G01690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
Genome locationClcChr07:1771979..1774868
RNA-Seq ExpressionClc07G01690
SyntenyClc07G01690
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066236.1 protein LATE FLOWERING-like [Cucumis melo var. makuwa]2.8e-6989.03Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPNNQQLFY
        MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PF AP SLVFAASQQQHHP GLLPHPVYIATHGANLHCFPNNQQL Y
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPNNQQLFY

Query:  ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        ENMV+CGGVCSSNRYHQ   +EE+LLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_008447640.1 PREDICTED: protein LATE FLOWERING-like [Cucumis melo]6.5e-7483.43Show/hide
Query:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-G
        MEYEE +S+V   ETNNN     ++EMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PF AP SLVFAASQQQHHP G
Subjt:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-G

Query:  LLPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        LLPHPVYIATHGANLHCFPNNQQL YENMV+CGGVCSSNRYHQ   +EE+LLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  LLPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_022931139.1 protein LATE FLOWERING [Cucurbita moschata]2.9e-5869.78Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY-SSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYI
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDY SSS++   + P  VFA +QQ HHP +LPHPVYI
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY-SSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYI

Query:  ATHGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        A HGANLHCFPNNQQ+FY         E+MVY GGVCS NRY QCGE+E+ +LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  ATHGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_031739318.1 protein LATE FLOWERING [Cucumis sativus]2.0e-7583.89Show/hide
Query:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHPGL
        MEYEE +S+V   ETN+N     +VEMEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PFPAP SLVFAASQQQHHPGL
Subjt:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHPGL

Query:  LPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        LPHPVYIATHGANLHCFPNNQQL YENMV+CGGVC SNRYHQ   +EE+LLNWER+IKKDLSRINHDKEKEQKLDLSLHL
Subjt:  LPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]4.1e-8489.77Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY----SSSTTPFPAPPSLVFAASQQQHHPGLLPHP
        MEYEEK+SQVAETNNNIVEMEETP+RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY    SS  +PFPAPPSLVF AS QQHHPGLLP P
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY----SSSTTPFPAPPSLVFAASQQQHHPGLLPHP

Query:  VYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        VYIATHG NLHCFPNNQQL YENMVYCGGVC+SNRYHQCG +EE+LLNWERSIKKDLSRINHDKEKEQKLDLSLHL
Subjt:  VYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein2.5e-7189.61Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLFYE
        MEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PFPAP SLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL YE
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLFYE

Query:  NMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        NMV+CGGVC SNRYHQ   +EE+LLNWER+IKKDLSRINHDKEKEQKLDLSLHL
Subjt:  NMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A1S3BIU8 protein LATE FLOWERING-like3.1e-7483.43Show/hide
Query:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-G
        MEYEE +S+V   ETNNN     ++EMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PF AP SLVFAASQQQHHP G
Subjt:  MEYEEKVSQVA--ETNNN-----IVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-G

Query:  LLPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        LLPHPVYIATHGANLHCFPNNQQL YENMV+CGGVCSSNRYHQ   +EE+LLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  LLPHPVYIATHGANLHCFPNNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A5A7VIQ7 Protein LATE FLOWERING-like1.4e-6989.03Show/hide
Query:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPNNQQLFY
        MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI DYS S  +PF AP SLVFAASQQQHHP GLLPHPVYIATHGANLHCFPNNQQL Y
Subjt:  MEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYS-SSTTPFPAPPSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPNNQQLFY

Query:  ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        ENMV+CGGVCSSNRYHQ   +EE+LLNWER+IK DLSRINHDKEKEQKLDLSLHL
Subjt:  ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A6J1ETH7 protein LATE FLOWERING1.4e-5869.78Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY-SSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYI
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKR+SDY SSS++   + P  VFA +QQ HHP +LPHPVYI
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDY-SSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYI

Query:  ATHGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
        A HGANLHCFPNNQQ+FY         E+MVY GGVCS NRY QCGE+E+ +LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  ATHGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

A0A6J1K4H5 protein LATE FLOWERING-like2.4e-5870.17Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA
        ME EE+  QVAE+++  VEMEETPSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRISDYSSS+T   + P  VFA +QQ HHP +LPHP+YIA
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA

Query:  THGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
         HG NLHCFPN+QQ+FY         E+MVY GGVCS NRY QCGE+EE++LNW+RSIKK       DKEKEQKLDLSLHL
Subjt:  THGANLHCFPNNQQLFY---------ENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 22.9e-0849.3Show/hide
Query:  VSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK---RISDYSSSTTPFP
        +S  + ++ N     E P RVF C +C RKF SSQALGGHQNAHK ERT A+K++   R S+   S  P+P
Subjt:  VSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK---RISDYSSSTTPFP

Q39263 Zinc finger protein 41.2e-0953.33Show/hide
Query:  VSQVAETNNNIVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S  +E++N   + ++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVAETNNNIVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

Q39266 Zinc finger protein 74.9e-0838.61Show/hide
Query:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPH----PVYIATHGANLHCFPNNQQLFY
        E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +            P +   ++   Q H GLL H    P  + +   +   F N   LF+
Subjt:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPH----PVYIATHGANLHCFPNNQQLFY

Query:  E
        +
Subjt:  E

Q42485 Zinc finger protein 12.4e-0748.21Show/hide
Query:  KVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK
        K S  + +++   + +    RVF C +C RKF SSQALGGHQNAHK+ERT A++ +
Subjt:  KVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK

Q9FKA9 Protein LATE FLOWERING5.6e-2039.01Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA
        +E EE++    E N    +   +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+ ++       P  VF +S  QHH  +L +P    
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA

Query:  THGANLHCFPN---NQQLFYEN-------MVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
           A++ CFP    +  +F  +         + G  C       C ++  D+L+   ++      +N DK K+Q LDLSLHL
Subjt:  THGANLHCFPN---NQQLFYEN-------MVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 73.5e-0938.61Show/hide
Query:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPH----PVYIATHGANLHCFPNNQQLFY
        E   RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +            P +   ++   Q H GLL H    P  + +   +   F N   LF+
Subjt:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPH----PVYIATHGANLHCFPNNQQLFY

Query:  E
        +
Subjt:  E

AT1G66140.1 zinc finger protein 48.3e-1153.33Show/hide
Query:  VSQVAETNNNIVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI
        +S  +E++N   + ++ PS   RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Subjt:  VSQVAETNNNIVEMEETPS---RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI

AT5G01860.1 C2H2 and C2HC zinc fingers superfamily protein4.1e-1034.36Show/hide
Query:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS-DYSSSTTPFPAPPS-LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLFYEN
        E  +RVF C FC ++F +SQALGGHQNAHK+ER+ A++ K I  +Y   +     PPS L F++S  Q+  G+  +P    T       +P N  +F   
Subjt:  ETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRIS-DYSSSTTPFPAPPS-LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLFYEN

Query:  MVYCGGVCSSNRYHQCGEEEEDL-LN---------WERSIKKDLSRINHDKEKEQKLDLSLHL
          Y GG+      H    + +DL +N          ++++KKD  +   D  K+  +DLSL L
Subjt:  MVYCGGVCSSNRYHQCGEEEEDL-LN---------WERSIKKDLSRINHDKEKEQKLDLSLHL

AT5G48890.1 C2H2-like zinc finger protein4.0e-2139.01Show/hide
Query:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA
        +E EE++    E N    +   +  R+FPCLFCSRKF SSQALGGHQNAHKKERTAAR+AKR  D+ ++       P  VF +S  QHH  +L +P    
Subjt:  MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIA

Query:  THGANLHCFPN---NQQLFYEN-------MVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL
           A++ CFP    +  +F  +         + G  C       C ++  D+L+   ++      +N DK K+Q LDLSLHL
Subjt:  THGANLHCFPN---NQQLFYEN-------MVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL

AT5G57520.1 zinc finger protein 22.0e-0949.3Show/hide
Query:  VSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK---RISDYSSSTTPFP
        +S  + ++ N     E P RVF C +C RKF SSQALGGHQNAHK ERT A+K++   R S+   S  P+P
Subjt:  VSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAK---RISDYSSSTTPFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATGAGGAGAAGGTTTCACAAGTAGCTGAAACCAACAACAATATTGTTGAAATGGAAGAAACCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTT
TCAAAGCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACAGCCGCGAGAAAGGCGAAGCGAATATCCGATTATTCGTCGTCGACGACACCGTTCC
CGGCCCCGCCATCATTGGTTTTTGCAGCCAGTCAGCAACAACATCATCCAGGGCTATTGCCACATCCTGTTTACATTGCTACTCATGGGGCTAATCTTCATTGTTTTCCC
AATAACCAACAATTGTTCTATGAAAACATGGTTTATTGTGGTGGGGTTTGTTCAAGCAATAGATATCATCAATGTGGGGAAGAGGAGGAAGATTTGTTGAATTGGGAGAG
AAGCATAAAGAAGGATCTTAGTAGGATAAATCATGATAAGGAAAAAGAACAAAAACTTGATCTTTCTCTCCATTTATAG
mRNA sequenceShow/hide mRNA sequence
TCACATGTGATGAACTCGATATGCCAATATGGAATATGAGGAGAAGGTTTCACAAGTAGCTGAAACCAACAACAATATTGTTGAAATGGAAGAAACCCCATCAAGAGTTT
TCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAAGCTTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACAGCCGCGAGAAAGGCGAAGCGAATATCC
GATTATTCGTCGTCGACGACACCGTTCCCGGCCCCGCCATCATTGGTTTTTGCAGCCAGTCAGCAACAACATCATCCAGGGCTATTGCCACATCCTGTTTACATTGCTAC
TCATGGGGCTAATCTTCATTGTTTTCCCAATAACCAACAATTGTTCTATGAAAACATGGTTTATTGTGGTGGGGTTTGTTCAAGCAATAGATATCATCAATGTGGGGAAG
AGGAGGAAGATTTGTTGAATTGGGAGAGAAGCATAAAGAAGGATCTTAGTAGGATAAATCATGATAAGGAAAAAGAACAAAAACTTGATCTTTCTCTCCATTTATAG
Protein sequenceShow/hide protein sequence
MEYEEKVSQVAETNNNIVEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYSSSTTPFPAPPSLVFAASQQQHHPGLLPHPVYIATHGANLHCFP
NNQQLFYENMVYCGGVCSSNRYHQCGEEEEDLLNWERSIKKDLSRINHDKEKEQKLDLSLHL