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Clc07G02000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G02000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationClcChr07:2027276..2028191
RNA-Seq ExpressionClc07G02000
SyntenyClc07G02000
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5586585.1 hypothetical protein H5410_047019 [Solanum commersonii]1.9e-0446.77Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV
        D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +   I N+T   N E+ Q V
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV

KAG6606311.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0960.66Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQK
        D E A+PKFGEW+DRDA  PDNYTAIF  VRE RQD G    +     N  +NQN EQNQK
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQK

KAG7036250.1 hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1060Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMKS
        D E A+PKFGEW+DRDA  PDNYTAIF  VRE RQD G    +     N  +NQN EQNQKV  S
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMKS

XP_030472812.1 RPM1-interacting protein 4-like [Syzygium oleosum]2.5e-0463.64Show/hide
Query:  FVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRART
        FVD  AA+PKFGEWD+ D  + D YT IFN VRE RQ  G ART
Subjt:  FVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRART

XP_038888923.1 RPM1-interacting protein 4-like [Benincasa hispida]3.9e-1880.65Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPG-RARTSSRSIDNSTNNQNHEQNQK
        DNEA +PKFGEWDDRDAKAP+NYTAIF  VREGRQ+PG RA T  RSI+NSTNNQNHE NQK
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPG-RARTSSRSIDNSTNNQNHEQNQK

TrEMBL top hitse value%identityAlignment
A0A0A0L950 AvrRpt-cleavage domain-containing protein3.7e-1472.58Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV
        DNE A+PKFGEWDD DAKAP+NYTAIFN VRE RQD     T +R ID STN+QNHEQNQK+
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV

M1CPC8 RIN4c protein3.5e-0445.16Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV
        D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q V
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV

M1CPC9 RIN4c protein1.2e-0448.44Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMK
        D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +K MK
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMK

M1CPD0 RIN4c protein1.2e-0448.44Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMK
        D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +K MK
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMK

M1CPD2 RIN4c protein3.5e-0445.16Show/hide
Query:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV
        D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q V
Subjt:  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAA
AGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAA
ATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCACGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTGCCTTCA
AAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAA
AGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAA
ATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCACGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTGCCTTCA
AAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA
Protein sequenceShow/hide protein sequence
MHLEDIDSSKYCLEDFKFVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMKSFLPFLNQPHEIIVILISIVLRCCLPS
KLFRNAVVSHGQENDIVLHLHKHS