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Clc07G03900 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G03900
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr07:3976411..3977105
RNA-Seq ExpressionClc07G03900
SyntenyClc07G03900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6769080.1 hypothetical protein POTOM_024696 [Populus tomentosa]5.3e-0642.86Show/hide
Query:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS
        GH   +C+HR+D    N SNN GTN V   +    +   ++A   ++ D +WYLDSGAS+H+T + GNLS
Subjt:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS

PON91412.1 Zinc finger, CCHC-type, partial [Trema orientale]1.2e-0527.4Show/hide
Query:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSL----KGKEVQGSLPGRPREYGMYHLMGVN
        GHIA  C+HR+D      S+++       T   N++  A +  + ++ D +WY+DSGA+NHVT +L NL+L    KGKE      G   +  + H+ G +
Subjt:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSL----KGKEVQGSLPGRPREYGMYHLMGVN

Query:  EVSVLMNKEVEDRVYIAVVVAPTMKISNKNGSEDLISFVIHICLFV
        ++      ++ + +++  +    + IS      D +      C FV
Subjt:  EVSVLMNKEVEDRVYIAVVVAPTMKISNKNGSEDLISFVIHICLFV

RVX09873.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.3e-0643.42Show/hide
Query:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS
        GH A IC+HR+D      ++ T+PS N G          N  P  + +F  S  D SWYLDSGAS+H+T  LGNL+
Subjt:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS

TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]2.6e-0540.54Show/hide
Query:  GHIATICFHRYDK--LDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK
        GH A++C+ RYD   + + P+ N+  N          SP   +A  E++ D +WY DSGA+NHVT + GNL LK
Subjt:  GHIATICFHRYDK--LDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK

TXG63419.1 hypothetical protein EZV62_010413 [Acer yangbiense]2.2e-0746.58Show/hide
Query:  MGHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK
        +GH A+IC++R+D+   N   NT   F   +   N+SP A MA HE+L+D SWY ++GAS+HVT +L NL  K
Subjt:  MGHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK

TrEMBL top hitse value%identityAlignment
A0A2N9F2C9 Uncharacterized protein5.7e-0635.05Show/hide
Query:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLKGKEVQGSLPGRPREYGMYHLMGVNE
        GH A  C+HR+D                  S    S  AL+A   + QDP+WY DSGA++H+T +LGNL+L+  +  G    R R  G   L G+++
Subjt:  GHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLKGKEVQGSLPGRPREYGMYHLMGVNE

A0A438JLN8 Retrovirus-related Pol polyprotein from transposon RE12.6e-0643.42Show/hide
Query:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS
        GH A IC+HR+D      ++ T+PS N G          N  P  + +F  S  D SWYLDSGAS+H+T  LGNL+
Subjt:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS

A0A5C7I3A6 Uncharacterized protein1.0e-0746.58Show/hide
Query:  MGHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK
        +GH A+IC++R+D+   N   NT   F   +   N+SP A MA HE+L+D SWY ++GAS+HVT +L NL  K
Subjt:  MGHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLK

A0A803QD97 Uncharacterized protein8.8e-0743.42Show/hide
Query:  GHIATICFHRYDK--LDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLKGK
        GH A  C++R+D+  + T P  NTG N     + + ++  A +A  E LQD +WY +SGASNHVT+E  NL+ K K
Subjt:  GHIATICFHRYDK--LDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLKGK

F6H1I2 Uncharacterized protein4.4e-0643.42Show/hide
Query:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS
        GH A IC+HR+D      +  T+PS N G          N  P  + +F  S  D SWYLDSGAS+H+T  LGNL+
Subjt:  GHIATICFHRYD------KLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACATATAGCTACGATTTGTTTTCACAGATATGACAAACTAGACACTAACCCTTCAAACAACACTGGAACAAACTTTGTTCTACAAACCAGTCTTACCAAT
GAATCTCCTTTTGCCTTGATGGCGTTTCATGAAAGCTTGCAAGATCCATCATGGTATCTTGACAGTGGAGCAAGCAACCACGTTACTACTGAACTTGGAAATTTG
TCACTAAAAGGAAAGGAAGTCCAAGGAAGTTTGCCTGGCAGGCCTCGTGAATATGGCATGTATCATTTGATGGGAGTAAATGAAGTCTCAGTCCTTATGAATAAA
GAAGTTGAAGATCGAGTCTACATAGCAGTGGTAGTAGCCCCTACCATGAAGATTTCAAACAAGAATGGAAGTGAAGATTTGATTTCTTTCGTCATTCATATTTGT
CTGTTTGTACTCTTGATGTTTAACACCAAAGATTGGGTCATCCATCTCCTAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACATATAGCTACGATTTGTTTTCACAGATATGACAAACTAGACACTAACCCTTCAAACAACACTGGAACAAACTTTGTTCTACAAACCAGTCTTACCAAT
GAATCTCCTTTTGCCTTGATGGCGTTTCATGAAAGCTTGCAAGATCCATCATGGTATCTTGACAGTGGAGCAAGCAACCACGTTACTACTGAACTTGGAAATTTG
TCACTAAAAGGAAAGGAAGTCCAAGGAAGTTTGCCTGGCAGGCCTCGTGAATATGGCATGTATCATTTGATGGGAGTAAATGAAGTCTCAGTCCTTATGAATAAA
GAAGTTGAAGATCGAGTCTACATAGCAGTGGTAGTAGCCCCTACCATGAAGATTTCAAACAAGAATGGAAGTGAAGATTTGATTTCTTTCGTCATTCATATTTGT
CTGTTTGTACTCTTGATGTTTAACACCAAAGATTGGGTCATCCATCTCCTAGAATAG
Protein sequenceShow/hide protein sequence
MGHIATICFHRYDKLDTNPSNNTGTNFVLQTSLTNESPFALMAFHESLQDPSWYLDSGASNHVTTELGNLSLKGKEVQGSLPGRPREYGMYHLMGVNEVSVLMNK
EVEDRVYIAVVVAPTMKISNKNGSEDLISFVIHICLFVLLMFNTKDWVIHLLE