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Clc07G04154 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G04154
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr07:4297780..4301651
RNA-Seq ExpressionClc07G04154
SyntenyClc07G04154
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABW74555.1 gag-pol protein [Boechera divaricarpa]1.7e-0646.75Show/hide
Query:  KFNGQNYDDWMEFVKLNARLFGLDSALIMNE-PTKPTDTSSEADKKLWENWERY----LNLLR------LPPSPPLT
        KFNG NY +W E ++    + GLD A+I NE P   T  SSE+DK  +ENWERY    LNL+R      + PS P T
Subjt:  KFNGQNYDDWMEFVKLNARLFGLDSALIMNE-PTKPTDTSSEADKKLWENWERY----LNLLR------LPPSPPLT

KAE8665748.1 hypothetical protein F3Y22_tig00112530pilonHSYRG00240 [Hibiscus syriacus]1.1e-1356.16Show/hide
Query:  NYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER----YLNLLRLPPSPPLTVGHRKSHS
        N DDW+E+VKLNA L GLD A++MNEPTK TDTS EADKKLWENWER     ++ L+L   P + +   K+ +
Subjt:  NYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER----YLNLLRLPPSPPLTVGHRKSHS

KAE8707246.1 hypothetical protein F3Y22_tig00110384pilonHSYRG00078 [Hibiscus syriacus]2.1e-1755.42Show/hide
Query:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER---YLNLLRLPPSPPLTVGHRKSHS
        MT +GIKFNGQ YDDW+E+VKLN  L GL+ AL+M+EPTK  DTS +ADKKLWENWER    ++ L+L  +P +     K+ +
Subjt:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER---YLNLLRLPPSPPLTVGHRKSHS

KAE8728730.1 hypothetical protein F3Y22_tig00004072pilonHSYRG00021 [Hibiscus syriacus]5.0e-1957.14Show/hide
Query:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWERYLNL----LRLPPSPPLTVGHRKSHS
        M A+GIKFNGQ YDDW+++VKLN  L GLD  ++M EPTKPTDT SEA+KKLWENWER   L    L+L  +P + + H K+ +
Subjt:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWERYLNL----LRLPPSPPLTVGHRKSHS

XP_042059437.1 uncharacterized protein LOC121803930 [Salvia splendens]8.2e-0640Show/hide
Query:  SGIKFNGQNYDDWMEFVKLNARLFGLDSALIM-NEPTKPTDTSSEADKKLWENWER----YLNLLRL------PPSPPLTVGHRK
        S +KFNGQNY +W E ++ +  +  LD A++  +EP   T+ SSE DK  +E WER     LNL+R+       PS P T   R+
Subjt:  SGIKFNGQNYDDWMEFVKLNARLFGLDSALIM-NEPTKPTDTSSEADKKLWENWER----YLNLLRL------PPSPPLTVGHRK

TrEMBL top hitse value%identityAlignment
A0A6A2WWC2 Uncharacterized protein5.2e-1456.16Show/hide
Query:  NYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER----YLNLLRLPPSPPLTVGHRKSHS
        N DDW+E+VKLNA L GLD A++MNEPTK TDTS EADKKLWENWER     ++ L+L   P + +   K+ +
Subjt:  NYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER----YLNLLRLPPSPPLTVGHRKSHS

A0A6A3ASJ6 Uncharacterized protein1.0e-1755.42Show/hide
Query:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER---YLNLLRLPPSPPLTVGHRKSHS
        MT +GIKFNGQ YDDW+E+VKLN  L GL+ AL+M+EPTK  DTS +ADKKLWENWER    ++ L+L  +P +     K+ +
Subjt:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER---YLNLLRLPPSPPLTVGHRKSHS

A0A6A3CHG6 Uncharacterized protein2.4e-1957.14Show/hide
Query:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWERYLNL----LRLPPSPPLTVGHRKSHS
        M A+GIKFNGQ YDDW+++VKLN  L GLD  ++M EPTKPTDT SEA+KKLWENWER   L    L+L  +P + + H K+ +
Subjt:  MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWERYLNL----LRLPPSPPLTVGHRKSHS

A0A6A5MVH0 Uncharacterized protein6.8e-0650.94Show/hide
Query:  IKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER
        +KFNG NY DW E ++ +  +  LD A+IM+     T+TSSEADK L+E WER
Subjt:  IKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWER

B6REK5 Gag-pol protein8.0e-0746.75Show/hide
Query:  KFNGQNYDDWMEFVKLNARLFGLDSALIMNE-PTKPTDTSSEADKKLWENWERY----LNLLR------LPPSPPLT
        KFNG NY +W E ++    + GLD A+I NE P   T  SSE+DK  +ENWERY    LNL+R      + PS P T
Subjt:  KFNGQNYDDWMEFVKLNARLFGLDSALIMNE-PTKPTDTSSEADKKLWENWERY----LNLLR------LPPSPPLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCCAGTGGTATCAAGTTTAATGGGCAGAACTATGATGATTGGATGGAATTTGTCAAGCTAAATGCTAGGCTTTTTGGACTCGATTCAGCTCTAATTATGAATGA
GCCCACTAAACCGACTGATACTAGTTCGGAGGCAGACAAGAAGCTGTGGGAGAACTGGGAAAGGTATTTGAATTTGTTGCGCCTCCCTCCGTCCCCACCGTTAACGGTCG
GGCACCGGAAGTCGCATTCTACAACAGCAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCCAGTGGTATCAAGTTTAATGGGCAGAACTATGATGATTGGATGGAATTTGTCAAGCTAAATGCTAGGCTTTTTGGACTCGATTCAGCTCTAATTATGAATGA
GCCCACTAAACCGACTGATACTAGTTCGGAGGCAGACAAGAAGCTGTGGGAGAACTGGGAAAGGTATTTGAATTTGTTGCGCCTCCCTCCGTCCCCACCGTTAACGGTCG
GGCACCGGAAGTCGCATTCTACAACAGCAATATAA
Protein sequenceShow/hide protein sequence
MTASGIKFNGQNYDDWMEFVKLNARLFGLDSALIMNEPTKPTDTSSEADKKLWENWERYLNLLRLPPSPPLTVGHRKSHSTTAI