; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G04260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G04260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionElf4 domain-containing protein
Genome locationClcChr07:4550950..4551339
RNA-Seq ExpressionClc07G04260
SyntenyClc07G04260
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]3.9e-5591.47Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]8.1e-5389.15Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE DA+VW SFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFS+ F+NHK RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

XP_004149248.1 protein EARLY FLOWERING 4 [Cucumis sativus]7.3e-5489.92Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +  FPDEYD EVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]3.9e-5591.47Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

XP_038892867.1 protein EARLY FLOWERING 4-like [Benincasa hispida]5.6e-5492.37Show/hide
Query:  MADTNSRRKSKMKPSA-TTTTTTTTTTSDDGQNDG-FPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV
        MAD N RRKSKMKPSA TTTTTTTTTTSDDG +DG FPDEYDAEVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV
Subjt:  MADTNSRRKSKMKPSA-TTTTTTTTTTSDDGQNDG-FPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVV

Query:  SMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        SMYSDFSSDFS+AF NHKPRNGKRGS+NPNA
Subjt:  SMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein3.5e-5489.92Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +  FPDEYD EVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

A0A1S3CIT1 uncharacterized protein LOC1035014401.9e-5591.47Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

A0A5A7SR92 Protein EARLY FLOWERING 41.9e-5591.47Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFSTAFHNHKPR+GKRG++NP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

A0A6J1GYX8 protein EARLY FLOWERING 4-like2.5e-5288.37Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MAD N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE DA+VW SFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFS+ F+N+K RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

A0A6J1IH33 protein EARLY FLOWERING 4-like4.3e-5287.6Show/hide
Query:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
        MA+ N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE D +VW SFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM
Subjt:  MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        YSDFSSDFS+ F+NHK RNGKRGSSNP+A
Subjt:  YSDFSSDFSTAFHNHKPRNGKRGSSNPNA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.0e-2261.11Show/hide
Query:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FS+ FH  K  +   G++   A
Subjt:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA

O80877 Protein ELF4-LIKE 14.1e-1550Show/hide
Query:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSS
        D EVW++    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F + + R  K G +
Subjt:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSS

Q570U6 Protein ELF4-LIKE 42.5e-1246.15Show/hide
Query:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 33.8e-1339.33Show/hide
Query:  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +       +   G  N
Subjt:  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSN

Q94BS8 Protein ELF4-LIKE 27.9e-1143.59Show/hide
Query:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF + Y  D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 41.8e-1346.15Show/hide
Query:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 41.8e-1346.15Show/hide
Query:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 32.7e-1439.33Show/hide
Query:  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSN
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y D S++FS +       +   G  N
Subjt:  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSN

AT2G29950.1 ELF4-like 12.9e-1650Show/hide
Query:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSS
        D EVW++    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F + + R  K G +
Subjt:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSS

AT2G40080.1 Protein of unknown function (DUF1313)1.4e-2361.11Show/hide
Query:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+MYSD ++ FS+ FH  K  +   G++   A
Subjt:  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATACCAACTCCCGCCGCAAATCCAAAATGAAACCTTCAGCAACCACCACCACTACCACTACAACCACCACCAGCGACGACGGCCAAAACGACGGCTTCCCTGA
CGAATACGACGCCGAGGTGTGGAACTCCTTTGACCAGACCTTCCGGCAGGTCCAATCCGTGCTGGACCGGAACAGAACACTGATTCAACAGGTAAACGAGAATCACCAAT
CTCGAATTCCGAGCAACATGGTCGACAACGTTGCTCTCATCCAAGAACTCAATGGAAACATCTCTAAAGTTGTCTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACT
GCCTTCCACAACCACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCCAAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATACCAACTCCCGCCGCAAATCCAAAATGAAACCTTCAGCAACCACCACCACTACCACTACAACCACCACCAGCGACGACGGCCAAAACGACGGCTTCCCTGA
CGAATACGACGCCGAGGTGTGGAACTCCTTTGACCAGACCTTCCGGCAGGTCCAATCCGTGCTGGACCGGAACAGAACACTGATTCAACAGGTAAACGAGAATCACCAAT
CTCGAATTCCGAGCAACATGGTCGACAACGTTGCTCTCATCCAAGAACTCAATGGAAACATCTCTAAAGTTGTCTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACT
GCCTTCCACAACCACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCCAAATGCTTGA
Protein sequenceShow/hide protein sequence
MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFST
AFHNHKPRNGKRGSSNPNA