; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G04337 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G04337
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease H
Genome locationClcChr07:4840984..4841724
RNA-Seq ExpressionClc07G04337
SyntenyClc07G04337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY00620.1 Uncharacterized protein TCM_010507 [Theobroma cacao]3.1e-1333.82Show/hide
Query:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDG-VEMDNLIME-----------MSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYMKRF---------
        +R  R A+ +  E+    +  PHLY  F+  G +  ++L +E            SDLSI +  +E EE    +     + F P +  +  +         
Subjt:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDG-VEMDNLIME-----------MSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYMKRF---------

Query:  ----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQ
            +I +N  K  +DS F+ +       +ELD  EN E  D D++P+LLRLV++E R  VP+QE +ETINLG +   KEVRIG       + KLI LL 
Subjt:  ----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQ

Query:  EFWDVFA
        E+ DVFA
Subjt:  EFWDVFA

XP_017978298.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108662439 [Theobroma cacao]2.4e-1333.97Show/hide
Query:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIM------------EMSDLSITSIIKEHEEHE---------IGSLFFVLSLFSPFS--GYMK
        +R  R A+ +  E+    +  P+LY  F+  G     L+               SDLSI +  +  E+ E         +G     LS ++  S   Y+ 
Subjt:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIM------------EMSDLSITSIIKEHEEHE---------IGSLFFVLSLFSPFS--GYMK

Query:  RF----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISL
        +F    RI +N  +  +DS F+ +       +ELD  EN E  D D++P+LLRLV++E R  VP+QE +ETINLG +   KEVRIG       + KLI L
Subjt:  RF----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISL

Query:  LQEFWDVFA
        L E+ DVFA
Subjt:  LQEFWDVFA

XP_020205364.1 uncharacterized protein LOC109790590, partial [Cajanus cajan]7.5e-1535.11Show/hide
Query:  EMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGY-MKRFRIYSNVIKSKSDSNFQTE
        E  +  R A+LENRE    K+ I HLY +F+  GV   + +         ++IKE ++    +  ++         + +  F +  N I SKSD+N    
Subjt:  EMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGY-MKRFRIYSNVIKSKSDSNFQTE

Query:  LNGPIIDNELDE-VENNEAIDDDIS--PELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
         N  I  +  D  +   E  DDD+S  PE+  LV++E R+  P++EE+E INLG +N+ KE++IG    GE R KL+ LL E+ DVFA
Subjt:  LNGPIIDNELDE-VENNEAIDDDIS--PELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

XP_022147181.1 uncharacterized protein LOC111016192 [Momordica charantia]7.0e-1332.47Show/hide
Query:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLF------FVLSLFSPFSGYMKRFRIYSNVIKS
        + V  +++  R ++ EN E +  +  +P L  +F+  G+    +  E  + S+ + + E E  ++G         F LS +S            SN  + 
Subjt:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLF------FVLSLFSPFSGYMKRFRIYSNVIKS

Query:  KSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
        + D++ + EL+ PI +     +E++E IDD+ S ELLR++ EE+++  P++E  ETINLG+  E KEV+IG     E R KLI LL E+ DVFA
Subjt:  KSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]7.0e-1330.57Show/hide
Query:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYM-----KRFRIYSNVIKSK
        + V  +++  R ++ EN E +  + I+P L  +F+  G     +  E  + S+ + + E E  ++G   ++       S +            SN  + +
Subjt:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYM-----KRFRIYSNVIKSK

Query:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
         D++ + EL+ PI       +E++E IDD+ S ELLR+++EE+++  P++E  ET+NLG+  E KE++IG     E R KLI LL E+ DVFA
Subjt:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

TrEMBL top hitse value%identityAlignment
A0A061E6J4 Uncharacterized protein1.5e-1333.82Show/hide
Query:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDG-VEMDNLIME-----------MSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYMKRF---------
        +R  R A+ +  E+    +  PHLY  F+  G +  ++L +E            SDLSI +  +E EE    +     + F P +  +  +         
Subjt:  KRLHRAAKLENREVNTDKLIIPHLYGNFKKDG-VEMDNLIME-----------MSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYMKRF---------

Query:  ----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQ
            +I +N  K  +DS F+ +       +ELD  EN E  D D++P+LLRLV++E R  VP+QE +ETINLG +   KEVRIG       + KLI LL 
Subjt:  ----RIYSNVIKSKSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQ

Query:  EFWDVFA
        E+ DVFA
Subjt:  EFWDVFA

A0A6A2WRD6 Ribonuclease H3.7e-1230.46Show/hide
Query:  EMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDG----VEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSL-FSPFSGYMKRFR-IYSNVIKSKSDS
        +  R  R A+L   E+    +  P L+  FK  G      M  L   + DL++ ++  E  ++E  S    L   F P S  ++    +Y N+ +   + 
Subjt:  EMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDG----VEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSL-FSPFSGYMKRFR-IYSNVIKSKSDS

Query:  NFQTELNGPIID-------NELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
        N  T    P +D        E +E +N E  + ++  ELLR++++E++  +P++E +E +NLGT+ + KEV+IG     E R  LI+LLQE+ DVFA
Subjt:  NFQTELNGPIID-------NELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

A0A6J1D099 Ribonuclease H3.4e-1330.57Show/hide
Query:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYM-----KRFRIYSNVIKSK
        + V  +++  R ++ EN E +  + I+P L  +F+  G     +  E  + S+ + + E E  ++G   ++       S +            SN  + +
Subjt:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYM-----KRFRIYSNVIKSK

Query:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
         D++ + EL+ PI       +E++E IDD+ S ELLR+++EE+++  P++E  ET+NLG+  E KE++IG     E R KLI LL E+ DVFA
Subjt:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

A0A6J1D1K4 uncharacterized protein LOC1110161923.4e-1332.47Show/hide
Query:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLF------FVLSLFSPFSGYMKRFRIYSNVIKS
        + V  +++  R ++ EN E +  +  +P L  +F+  G+    +  E  + S+ + + E E  ++G         F LS +S            SN  + 
Subjt:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLF------FVLSLFSPFSGYMKRFRIYSNVIKS

Query:  KSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
        + D++ + EL+ PI +     +E++E IDD+ S ELLR++ EE+++  P++E  ETINLG+  E KEV+IG     E R KLI LL E+ DVFA
Subjt:  KSDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

A0A6J1D7C7 Ribonuclease H8.3e-1229.02Show/hide
Query:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPF-----SGYMKRFRIYSNVIKSK
        + V  M++  R ++ EN E +  +  +P L  + +  G     +  E  + S+ + + E  E              PF      G+       +  I+  
Subjt:  MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPF-----SGYMKRFRIYSNVIKSK

Query:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA
        +DS ++       +D  +  +E++E IDD+ S ELLR+++EE+++  P++E  ET+NLG+  E KE++IG     E R KLI LL E+ DVFA
Subjt:  SDSNFQTELNGPIIDNELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTCATGAAATGAAAAGATTGCATAGAGCTGCCAAACTAGAGAACCGGGAAGTGAATACCGACAAATTGATTATCCCACATCTTTATGGAAACTTCAAGAAGGA
TGGAGTCGAAATGGATAATCTAATAATGGAAATGTCAGACCTTTCAATCACTTCTATTATCAAGGAGCATGAAGAACATGAGATAGGATCCTTGTTCTTTGTTCTATCTT
TGTTCTCTCCTTTCTCTGGCTATATGAAACGATTCAGGATTTACAGCAATGTAATTAAAAGCAAAAGTGATAGTAATTTTCAAACTGAGCTCAATGGTCCCATCATAGAC
AACGAACTTGACGAAGTTGAGAACAACGAGGCTATAGACGATGATATATCACCTGAACTTCTACGTTTAGTTCAAGAGGAGAAAAGAATTTATGTACCTAATCAAGAAGA
AATTGAAACTATCAACTTAGGAACAGACAATGAAGTTAAAGAAGTTAGAATTGGAAACATTTATGGTGGTGAGGGACGAACCAAACTAATCTCCTTATTACAAGAATTTT
GGGACGTATTCGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTCATGAAATGAAAAGATTGCATAGAGCTGCCAAACTAGAGAACCGGGAAGTGAATACCGACAAATTGATTATCCCACATCTTTATGGAAACTTCAAGAAGGA
TGGAGTCGAAATGGATAATCTAATAATGGAAATGTCAGACCTTTCAATCACTTCTATTATCAAGGAGCATGAAGAACATGAGATAGGATCCTTGTTCTTTGTTCTATCTT
TGTTCTCTCCTTTCTCTGGCTATATGAAACGATTCAGGATTTACAGCAATGTAATTAAAAGCAAAAGTGATAGTAATTTTCAAACTGAGCTCAATGGTCCCATCATAGAC
AACGAACTTGACGAAGTTGAGAACAACGAGGCTATAGACGATGATATATCACCTGAACTTCTACGTTTAGTTCAAGAGGAGAAAAGAATTTATGTACCTAATCAAGAAGA
AATTGAAACTATCAACTTAGGAACAGACAATGAAGTTAAAGAAGTTAGAATTGGAAACATTTATGGTGGTGAGGGACGAACCAAACTAATCTCCTTATTACAAGAATTTT
GGGACGTATTCGCATAG
Protein sequenceShow/hide protein sequence
MNVHEMKRLHRAAKLENREVNTDKLIIPHLYGNFKKDGVEMDNLIMEMSDLSITSIIKEHEEHEIGSLFFVLSLFSPFSGYMKRFRIYSNVIKSKSDSNFQTELNGPIID
NELDEVENNEAIDDDISPELLRLVQEEKRIYVPNQEEIETINLGTDNEVKEVRIGNIYGGEGRTKLISLLQEFWDVFA