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Clc07G04460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G04460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationClcChr07:5037607..5045787
RNA-Seq ExpressionClc07G04460
SyntenyClc07G04460
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN50265.2 hypothetical protein Csa_005809 [Cucumis sativus]1.1e-5983.1Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP  GL AT I  LPITLYK PAA+ED
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
            A    GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

XP_016901617.1 PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo]1.8e-6287.41Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP   GL ATAIN LPITLYKAPAAEE
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE

Query:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
        DP + A+ A GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

XP_022996486.1 RING-H2 finger protein ATL66 [Cucurbita maxima]4.5e-5373.24Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MAT Q PPS+ WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L TFS AVPG R  RSPP  GL+  AINC PITLYK  AA E+
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
          +T  A   EC ICLGVFEDGEKVKIL  C HC+HSECVD+
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

XP_031741031.1 RING-H2 finger protein ATL66 [Cucumis sativus]1.1e-5983.1Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP  GL AT I  LPITLYK PAA+ED
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
            A    GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

XP_038892868.1 RING-H2 finger protein ATL66-like [Benincasa hispida]9.3e-6789.44Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MATSQVPPS+TWHFTELDDRLFQIRGRTFFFVAVLFA+ILLVTFIFLYARWVCRFHQLTTF AAVPGGRPPRSPP  GL  TAINCLPI+LYKAP AEED
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
        P +T  AA GECSICLGVFEDGEKVKILP CRHCYHSECVDR
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ2 RING-type E3 ubiquitin transferase5.3e-6083.1Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA +P  R P SPP  GL AT I  LPITLYK PAA+ED
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
            A    GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

A0A1S4E052 RING-type E3 ubiquitin transferase8.8e-6387.41Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP   GL ATAIN LPITLYKAPAAEE
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE

Query:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
        DP + A+ A GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

A0A5A7T2R0 RING-type E3 ubiquitin transferase8.8e-6387.41Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE
        MATSQVPPS+ WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSA++P  R PRSPP   GL ATAIN LPITLYKAPAAEE
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPP-HLGLEATAINCLPITLYKAPAAEE

Query:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
        DP + A+ A GECSICLGVFEDGEKVKILPPCRHCYHSECVDR
Subjt:  DPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

A0A6J1FWS0 RING-type E3 ubiquitin transferase3.5e-5173.94Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MAT Q PPS+ WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTTFSA+VPG R  RSPP  GL+   INC  ITLYKA A E D
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
          +TA     EC ICLGVFEDGEKVKIL  C HC+HSECVD+
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

A0A6J1K4V5 RING-type E3 ubiquitin transferase2.2e-5373.24Show/hide
Query:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED
        MAT Q PPS+ WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L TFS AVPG R  RSPP  GL+  AINC PITLYK  AA E+
Subjt:  MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEED

Query:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR
          +T  A   EC ICLGVFEDGEKVKIL  C HC+HSECVD+
Subjt:  PGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVDR

SwissProt top hitse value%identityAlignment
Q67YI6 RING-H2 finger protein ATL651.0e-0731.43Show/hide
Query:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--
        V VL A  L VT+  L            + RW CR  +L   S+A                        S    GL+ + I  LP+ LY A A    P  
Subjt:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--

Query:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        G T+ A   +C++CL  FE+G+ V+ LP C H +H EC+D
Subjt:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD

Q9LRB7 E3 ubiquitin-protein ligase EL53.5e-0833.58Show/hide
Query:  VAVLFAVILLVTFIFLYARWVC--RFHQLTTFSAAVPGGRP-PRSPPHL--------GLEATAINCLPITLYK----APAAEEDPGSTATAAGGECSICL
        VA +  V   +T  F+  +  C  R   +TT S +  G RP PR             G++   +  LP+T+Y     A AA+E+        G EC++CL
Subjt:  VAVLFAVILLVTFIFLYARWVC--RFHQLTTFSAAVPGGRP-PRSPPHL--------GLEATAINCLPITLYK----APAAEEDPGSTATAAGGECSICL

Query:  GVFEDGEKVKILPPCRHCYHSECVDR-TGSLAVC
           EDGE+ + LP C H +H+ECVD   GS + C
Subjt:  GVFEDGEKVKILPPCRHCYHSECVDR-TGSLAVC

Q9LZV8 RING-H2 finger protein ATL749.2e-0952.94Show/hide
Query:  LYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        L K P AE   G    AA  EC+ICLG F DGE+V++LPPC H +H  C+D
Subjt:  LYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD

Q9M0R7 RING-H2 finger protein ATL392.3e-0740.85Show/hide
Query:  PRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        PR PP  GL+A AI   P  +Y   A   +PG        EC +CL  F+D E ++++PPC H +H++CVD
Subjt:  PRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD

Q9SRM0 RING-H2 finger protein ATL666.1e-2144.27Show/hide
Query:  WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGE
        WH  + DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     GL+   I  LP+ L +   AEE+          E
Subjt:  WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGE

Query:  CSICLGVFEDGEKVKILPPCRHCYHSECVDR
        C ICLG FE+GEK+K+LPPC HCYH ECVDR
Subjt:  CSICLGVFEDGEKVKILPPCRHCYHSECVDR

Arabidopsis top hitse value%identityAlignment
AT2G42360.1 RING/U-box superfamily protein1.6e-0835.45Show/hide
Query:  VAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPC
        VA L  VIL+V  + LYAR+V R  +   F       R P   P  GL  T I  LP     A            A+  EC++CL V ++ +K + LP C
Subjt:  VAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPC

Query:  RHCYHSECVD
        +H +H +CVD
Subjt:  RHCYHSECVD

AT3G11110.1 RING/U-box superfamily protein4.4e-2244.27Show/hide
Query:  WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGE
        WH  + DDR FQI GRT FF   LF+V+L    + LY    C         A+ P  R  R     GL+   I  LP+ L +   AEE+          E
Subjt:  WHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGGE

Query:  CSICLGVFEDGEKVKILPPCRHCYHSECVDR
        C ICLG FE+GEK+K+LPPC HCYH ECVDR
Subjt:  CSICLGVFEDGEKVKILPPCRHCYHSECVDR

AT3G18930.1 RING/U-box superfamily protein7.2e-0931.43Show/hide
Query:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--
        V VL A  L VT+  L            + RW CR  +L   S+A                        S    GL+ + I  LP+ LY A A    P  
Subjt:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--

Query:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        G T+ A   +C++CL  FE+G+ V+ LP C H +H EC+D
Subjt:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD

AT3G18930.2 RING/U-box superfamily protein7.2e-0931.43Show/hide
Query:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--
        V VL A  L VT+  L            + RW CR  +L   S+A                        S    GL+ + I  LP+ LY A A    P  
Subjt:  VAVLFAVILLVTFIFL------------YARWVCRFHQLTTFSAAVPGGRPP----------------RSPPHLGLEATAINCLPITLYKAPAAEEDP--

Query:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        G T+ A   +C++CL  FE+G+ V+ LP C H +H EC+D
Subjt:  GSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD

AT5G01880.1 RING/U-box superfamily protein6.5e-1052.94Show/hide
Query:  LYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD
        L K P AE   G    AA  EC+ICLG F DGE+V++LPPC H +H  C+D
Subjt:  LYKAPAAEEDPGSTATAAGGECSICLGVFEDGEKVKILPPCRHCYHSECVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACATCCCAAGTCCCCCCGTCCATTACCTGGCACTTCACGGAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGC
CGTCATCCTTCTTGTAACTTTTATATTCCTTTACGCCCGATGGGTCTGCCGATTCCACCAACTCACCACCTTCTCCGCTGCCGTACCCGGCGGCCGGCCGCCGAGGTCTC
CGCCGCATCTGGGGCTCGAGGCGACGGCGATTAACTGCCTCCCAATCACTCTATACAAGGCACCGGCGGCGGAGGAGGATCCAGGCTCCACCGCTACCGCTGCAGGAGGG
GAGTGCTCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTGAAGATTCTGCCACCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGAACCGGAAGCCTAGC
CGTGTGTTTGAAAGTGAAGGGCAAGCTAGATTTTGAGGAAACAAAGGATTCGGAGCAAGAACTAAGGGACTTGAAAGCCAAAAGTCCTTACTTACTCTACACAGAGGATG
GTTGGAGGATCTTAGAATCTAGAATCCGATCCTATGGCGCAATCTCACGGGATGGTCAGAGGGTCACAAGGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCACATCCCAAGTCCCCCCGTCCATTACCTGGCACTTCACGGAGCTCGACGATCGGCTCTTCCAAATCCGCGGCCGGACTTTCTTCTTCGTCGCCGTTTTATTCGC
CGTCATCCTTCTTGTAACTTTTATATTCCTTTACGCCCGATGGGTCTGCCGATTCCACCAACTCACCACCTTCTCCGCTGCCGTACCCGGCGGCCGGCCGCCGAGGTCTC
CGCCGCATCTGGGGCTCGAGGCGACGGCGATTAACTGCCTCCCAATCACTCTATACAAGGCACCGGCGGCGGAGGAGGATCCAGGCTCCACCGCTACCGCTGCAGGAGGG
GAGTGCTCCATTTGCTTGGGCGTGTTTGAGGATGGGGAGAAGGTGAAGATTCTGCCACCGTGCCGCCATTGTTACCATTCCGAGTGCGTTGACCGAACCGGAAGCCTAGC
CGTGTGTTTGAAAGTGAAGGGCAAGCTAGATTTTGAGGAAACAAAGGATTCGGAGCAAGAACTAAGGGACTTGAAAGCCAAAAGTCCTTACTTACTCTACACAGAGGATG
GTTGGAGGATCTTAGAATCTAGAATCCGATCCTATGGCGCAATCTCACGGGATGGTCAGAGGGTCACAAGGACCTAG
Protein sequenceShow/hide protein sequence
MATSQVPPSITWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTTFSAAVPGGRPPRSPPHLGLEATAINCLPITLYKAPAAEEDPGSTATAAGG
ECSICLGVFEDGEKVKILPPCRHCYHSECVDRTGSLAVCLKVKGKLDFEETKDSEQELRDLKAKSPYLLYTEDGWRILESRIRSYGAISRDGQRVTRT