CuGenDBv2

Gene ID	Clc07G04500
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	EAF domain-containing protein
Genome location	ClcChr07:5136660..5149063
RNA-Seq Expression	Clc07G04500
Synteny	Clc07G04500
Gene Ontology terms	GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0032783 - ELL-EAF complex (cellular component) GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domains	IPR019194 - Transcription elongation factor Eaf, N-terminal IPR027093 - EAF family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-156

87.29

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAVKQLRHLRQPGES+AA         A   A+ST+AS +HSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAK VVA+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
        KG ADYSSDPPNVSA SPG KNDDEHQDI+I+DIFGSV SDDENNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
Subjt:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG

Query:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        PTAAAALRAQVNAEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

XP_008454810.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]

1.1e-148

85.2

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++F+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVAT-TATATTAGV---AATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKS
        RLERLHRAV QLRHLRQPGESAAA AT TAT TTAGV   AAT ++ASVLHSLTPPEPRLSPPV KVAKPMHMGR SFPTMPVEVERIDIGEPGN GAK 
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVAT-TATATTAGV---AATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKS

Query:  VVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        VVA+KGL DYSSDPPN S SSPGLKNDDEHQDI+I+DIFGSV SDD NNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  VVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        GR                   +QSSSSSSSGSGSGSSSGSSS SSDSEGSDEDSVTSI
Subjt:  GREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]

2.3e-157

87.85

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAVKQLRHLRQPGES+AA         A  AA+ST+AS LHSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAK VVA+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
        KG ADYSSDPPNVSA SPG KNDDEHQDI+I+DIFGSV SDDENNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
Subjt:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG

Query:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        PTAAAALRAQVNAEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]

1.7e-157

87.85

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAVKQLRHLRQPGES+AA            AA+ST+AS LHSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAKSVVA+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
        KG ADYSSDPPNVSA SPG KNDDEHQDI+I+DIFGSV SDDENNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
Subjt:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG

Query:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        PTAAAALRAQVNAEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]

1.8e-170

94.43

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTT-----ASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAK
        RLERLHRAVKQLRHLRQPGESAAA A  A  TT GVAA +TT     AS LHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAK
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTT-----ASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAK

Query:  SVVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNA
        SVVA+KGLADYSSDPPNVSASSPGLKNDDEHQDI+I+D+FGSVLSDD NNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNA
Subjt:  SVVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNA

Query:  EGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        EGREGPTAAAALRAQV+AEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
Subjt:  EGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM56 EAF domain-containing protein

1.3e-145

84.87

Show/hide

Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++FVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATS---TTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSV
        RLERLHRAV QLRHLRQPGESAAAVA  A ATTAGVAA +   TTASVLHSLTPPEPRLSPPV KV+KPMHMGR SFPTMPVEVERIDIGEPGN GAK+ 
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATS---TTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSV

Query:  VANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEG
        VA+KGL +YSSDPPNVS SSPGLKNDDEHQDI+I+DIFGSV SDD NNAEEERVE GFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEG
Subjt:  VANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEG

Query:  REGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        R                   +QSSSSSSSGSGSGSSSGSSS SSDSE SDEDSVTSI
Subjt:  REGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

A0A1S3C0N3 ELL-associated factor 2

5.4e-149

85.2

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANN  EEPKTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDKTKPG LKKTKENRVTVEFQN+Q GKPN++F+GSSEDYK+NDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVAT-TATATTAGV---AATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKS
        RLERLHRAV QLRHLRQPGESAAA AT TAT TTAGV   AAT ++ASVLHSLTPPEPRLSPPV KVAKPMHMGR SFPTMPVEVERIDIGEPGN GAK 
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVAT-TATATTAGV---AATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKS

Query:  VVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
        VVA+KGL DYSSDPPN S SSPGLKNDDEHQDI+I+DIFGSV SDD NNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE
Subjt:  VVANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAE

Query:  GREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        GR                   +QSSSSSSSGSGSGSSSGSSS SSDSEGSDEDSVTSI
Subjt:  GREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

A0A6J1DE82 ELL-associated factor 1

1.0e-131

76.97

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Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MAN+NKEEPKTAPQ +RWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTK+NRVTVEFQNNQ G+PNVAFVGSSED KENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAV  LRH+RQ  ES               A TS T SV HSLT PEPRLSPPVAKV KPMHMGR SFP +PVEVERIDIGEPGNTGA SV A+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSA--SSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR
        K +ADY+SDPPNVSA   SPG+ NDDEHQDI+I++IFGSV SDD NN EEE+++ GFDIN+PH NDTDDEIADVDDSGDEA+KGPNAAE           
Subjt:  KGLADYSSDPPNVSA--SSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGR

Query:  EGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
               ALRAQVNAEGRD Q+SSSSSS SGSGSSSGSSSGSSDSE SDEDSVTSI
Subjt:  EGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

A0A6J1FGX9 ELL-associated factor 1

1.1e-157

87.85

Show/hide

Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAVKQLRHLRQPGES+AA         A  AA+ST+AS LHSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAK VVA+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
        KG ADYSSDPPNVSA SPG KNDDEHQDI+I+DIFGSV SDDENNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
Subjt:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG

Query:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        PTAAAALRAQVNAEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

A0A6J1JWD6 ELL-associated factor 1

8.4e-158

87.85

Show/hide

Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        MANNNKEEPKTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVT+EFQNNQ GKPNVAFVGSSEDYKENDAVLFFDGETF
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAVKQLRHLRQPGES+AA            AA+ST+AS LHSLTPPEPRLSPP AKV KPMHMGRGSFP++ VEVE+IDIGEPGNTGAKSVVA+
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
        KG ADYSSDPPNVSA SPG KNDDEHQDI+I+DIFGSV SDDENNAEE++V+ GFDIN+PH NDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG
Subjt:  KGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREG

Query:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI
        PTAAAALRAQVNAEGRD+QSSSSSSS SGSGSSSGSSSGSSDSEG+DEDSVTSI
Subjt:  PTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

SwissProt top hits

e value

%identity

Alignment

Q5RAM8 ELL-associated factor 1

2.7e-04

34.62

Show/hide

Query:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ
        L LG SF+      F T+RY+FKPASID +  G L+  K + VT+   +     P +  F G+   Y + D VL  + +T  + LE+L  ++ Q++  R 
Subjt:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ

Query:  PGES
         G S
Subjt:  PGES

Q91ZD6 ELL-associated factor 2

5.5e-05

40.23

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Query:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDY-KENDAVLFFDGETFRLERL
        L LG SF+ +    F T+RY+FKPASID +  G+L+  K  +VT+   N +   P V  F GS   Y KE   ++  D    RLE+L
Subjt:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDY-KENDAVLFFDGETFRLERL

Q96JC9 ELL-associated factor 1

2.7e-04

34.62

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Query:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ
        L LG SF+      F T+RY+FKPASID +  G L+  K + VT+   +     P +  F G+   Y + D VL  + +T  + LE+L  ++ Q++  R 
Subjt:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ

Query:  PGES
         G S
Subjt:  PGES

Q9D4C5 ELL-associated factor 1

2.7e-04

34.62

Show/hide

Query:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ
        L LG SF+      F T+RY+FKPASID +  G L+  K + VT+   +     P +  F G+   Y + D VL  + +T  + LE+L  ++ Q++  R 
Subjt:  LSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNV-AFVGSSEDYKENDAVLFFDGET--FRLERLHRAVKQLRHLRQ

Query:  PGES
         G S
Subjt:  PGES

Arabidopsis top hits

e value

%identity

Alignment

AT1G71080.1 RNA polymerase II transcription elongation factor

5.9e-71

52.63

Show/hide

Query:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF
        M+N++++EP TAP+ D+WY+L LG S KD+SS+KFCTLRYEFKPASIDK + GS+ K K+NRV+VEFQNNQ GKP V F GSSEDYKE+DAVLFFDGE F
Subjt:  MANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGETF

Query:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN
        RLERLHRAV QLRH+R PGESAAA                       S  P E RLS PV + AK   + R   P +PVEVERI+IG+P N+      AN
Subjt:  RLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVAN

Query:  KGLADYSSDPPNVSASSP-GLKND--DEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQ--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVN
         G         NV A+SP   KND  DEHQ+I++ +IFGS  + + +NAE+E  + G  +   ++  + T++EIADV DDSG E EKG NAAEALRAQVN
Subjt:  KGLADYSSDPPNVSASSP-GLKND--DEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQ--NDTDDEIADV-DDSGDEAEKGPNAAEALRAQVN

Query:  AEGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGS-DEDSVTSI
        AE ++  T++++  +  ++    D  S S SSGSGSG  S S S S  S GS DED V S+
Subjt:  AEGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEGS-DEDSVTSI

AT5G38050.1 RNA polymerase II transcription elongation factor

1.6e-47

42.33

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Query:  NNNKEEPKTAPQPDRWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDY--KENDAVLFFDG
        +N+ EEPK AP+P+RWYN++LGP+  + +   S KFCTLRYEFKPASID TKPG L K+K+N+VT+EFQNNQ  KP V F G SEDY  ++ DA+LFFDG
Subjt:  NNNKEEPKTAPQPDRWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDY--KENDAVLFFDG

Query:  ETFRLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSV
        E FRLE+LHR+VK+L+ LR P ESA+A                              ++ PPV K               PV++  IDI  P        
Subjt:  ETFRLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSV

Query:  VANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETG---FDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQV
                                  D  +D+NIED       ++E     +  +TG    DIN+PH  +  DDEIA VD + DE+ KG NAAEALRAQV
Subjt:  VANKGLADYSSDPPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETG---FDINIPHQND-TDDEIADVDDSGDEAEKGPNAAEALRAQV

Query:  NAEGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEG
        NAE RE      + ++  +  GR+ +SS S    SGSGSSS S S  S SEG
Subjt:  NAEGREGPTAAAALRAQVNAEGRDDQSSSSSSSGSGSGSSSGSSSGSSDSEG

Sequences

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CDS sequence

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ATGACAAAAATAGGGATAAGAATCGTGGACGGGGTCCACGATTTTCATCTCTTTCAATCCACTCGAGAGCCCTTCTTCCCCACATCCTCTCCTCCCCACTTATCTTCCTT
CACTCAAGACCTTTTCTTCCCGTCGCCATCGCCGCCATCCGTTCCAGTTGTCTCCACCGCCACCCTGAGCCCTCACCGAAGGCTAGAAGTCGTTGTCCGTCGTTCCAGCT
GTCTCAACCGCCACCTCGAGCCCTCACCGACTGTCAAAAGTCAAAAAGAAAAAGAAAAGCCATTCTCTCTCTTTCTCTCTCTCTCTCCACCGCCGCCTCTCTCTCCTCTT
TTCCTCCCCGTTGGCCGCCGCCGCTTCCAATTTCCTCTGCCCCGCCATCTCTCTCTCGCTCCATCGCCGACAGTTTTCGAAGGGTTGCACGTCGGGTGTCGCTGGATTCT
CGCCCTGAGTGTCGCTGTCGGCCTCTCGGCTCTCGCTGAATCTCGCTCTCCCGCTCTCACTTTCTCCCACTCGCCTCACGGTCTCCCGCGCCGAAATCACCCTCACGCTC
TCGGGCTCTCGCTGTCTCGCTGGGTTCCGCTCTCTCGTGCTCTCGCTCTCTCGCTCTCCCGCTCGACTCACGTTCCCCGCGCTCGGTATCGCCACAAGCCGTCGGACTCT
CGCTGTATCGCTGCCTCCCTCTCTCTCGCTCAAATCTCGCTTCTCGCTCGGGTTTCGCTCTCACTCGGATTTTTGGCTCTCGACAACGGTTCCTTTCTTGTCCGACCAGA
ACAGTGTTTGGCGATTGTTTTAGTCCGTAGGATCGGAGGAAGCTACGAGTTGGATCACGTTCGGGAGGTTGTGTTCCTTCGGGTTCACTGGAGGTTGTGTTCCTTCGGGT
TCATTGGTTCACCAGAGGTTGTGTTCCTTCGGGTTCACCAGAGATGGTGCTCCTTCGAGTACACTAGAGGTTTGTGTTTCTTCGGGATCACCAGAGGATACCTCCAGTCG
AATGTCACCTACACGAATGTGTTAGATCATTGCGTTTCTATCAAATACAATGTGGGTCGTATCCATAGTGTCACCAGGATAAGATTATCATTTGATCTACTAATGAACAC
TCAGGAGATCATGACATCATTGCCTAATTACTGCTATAATGGTGAAGACATTTGGTTGATGAATAATTTTGTTCAGGATGTACAACAATATTCAGTGCAACATAATTTAC
CAGAGCTAAGTTCTATGTGTGATCAATGTGTTGTAAGTGTCGAAGATATTGTTCAACAGACACGTAAACTTAATGTTGTCGGCATTGATAGAAGACGTGTTCGTCGTCGA
TGTCAACGACAACAGGCCGAGAATATTGTAGACATCCATTCACTGCTCTTCTCTCCCTCTCGCTCCCCTAATCGCAGGTCACCGCCGTCGTCGACGCCGTTCTCCCCGCC
GCCCTCCTTCCATCCGGCCACGCACCGCCAACCGCCGCCGCCTTCATCGGTTAGTCAAAATCCGGGCTCAACATCAGTCCGGCAGCCCGGTTTTCCCCCTGTTTCGGCGT
TCATCTGTGTAACCCACAACCTATGGGACCTTGAATCGACTTACCGTTCGGATCTCTTAATTTTCGCGCAATTTGGAACACTATACAGCAAGGGTTTGAGTTATCCTCGT
GAATTTTCATGGTTTCAGCTTGAAAAGATTCCAATGGCGAACAACAACAAAGAAGAGCCGAAGACCGCGCCCCAGCCCGATCGGTGGTATAACCTATCTCTTGGTCCTTC
ATTCAAGGATGAATCCTCCAACAAATTTTGCACTCTGCGATATGAATTTAAACCGGCGTCAATTGATAAAACGAAGCCGGGATCGCTTAAAAAGACCAAGGAAAATAGGG
TTACTGTTGAATTTCAGAACAATCAATTTGGGAAACCCAATGTGGCGTTTGTTGGCAGTAGTGAGGATTATAAGGAGAATGATGCCGTTTTGTTTTTTGACGGCGAGACA
TTTCGGTTGGAGCGGCTGCACCGAGCGGTCAAGCAACTTCGACACCTTCGACAGCCAGGCGAATCTGCTGCTGCGGTCGCTACCACTGCCACTGCCACTACCGCTGGCGT
GGCTGCCACATCTACCACTGCTTCTGTCCTTCATTCTTTGACACCACCGGAGCCTCGGTTATCTCCTCCAGTGGCTAAAGTTGCCAAACCTATGCATATGGGTCGAGGCA
GTTTTCCGACGATGCCGGTAGAGGTGGAAAGGATTGATATTGGAGAGCCAGGAAATACAGGTGCAAAATCTGTTGTTGCTAATAAAGGGCTTGCTGATTACTCATCAGAT
CCACCAAATGTATCTGCTTCCTCTCCGGGCCTGAAGAATGATGATGAGCATCAAGATATAAATATTGAAGATATTTTCGGGTCTGTTTTGTCTGATGATGAAAATAATGC
CGAAGAAGAAAGAGTTGAGACTGGATTTGATATAAATATACCACATCAGAATGATACTGATGATGAGATTGCTGATGTGGATGATAGTGGTGACGAAGCTGAGAAGGGAC
CTAATGCTGCAGAAGCTCTTAGAGCTCAGGTTAATGCCGAGGGCAGGGAGGGACCTACTGCTGCAGCAGCCCTAAGAGCTCAGGTAAATGCAGAGGGTAGGGACGACCAG
AGCTCGAGTTCTAGTAGTAGTGGTTCGGGCAGTGGCAGCAGCAGTGGAAGTAGCAGTGGCAGCAGTGACAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATCTGA

mRNA sequence

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Protein sequence

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MTKIGIRIVDGVHDFHLFQSTREPFFPTSSPPHLSSFTQDLFFPSPSPPSVPVVSTATLSPHRRLEVVVRRSSCLNRHLEPSPTVKSQKEKEKPFSLFLSLSPPPPLSPL
FLPVGRRRFQFPLPRHLSLAPSPTVFEGLHVGCRWILALSVAVGLSALAESRSPALTFSHSPHGLPRRNHPHALGLSLSRWVPLSRALALSLSRSTHVPRARYRHKPSDS
RCIAASLSLAQISLLARVSLSLGFLALDNGSFLVRPEQCLAIVLVRRIGGSYELDHVREVVFLRVHWRLCSFGFIGSPEVVFLRVHQRWCSFEYTRGLCFFGITRGYLQS
NVTYTNVLDHCVSIKYNVGRIHSVTRIRLSFDLLMNTQEIMTSLPNYCYNGEDIWLMNNFVQDVQQYSVQHNLPELSSMCDQCVVSVEDIVQQTRKLNVVGIDRRRVRRR
CQRQQAENIVDIHSLLFSPSRSPNRRSPPSSTPFSPPPSFHPATHRQPPPPSSVSQNPGSTSVRQPGFPPVSAFICVTHNLWDLESTYRSDLLIFAQFGTLYSKGLSYPR
EFSWFQLEKIPMANNNKEEPKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKTKPGSLKKTKENRVTVEFQNNQFGKPNVAFVGSSEDYKENDAVLFFDGET
FRLERLHRAVKQLRHLRQPGESAAAVATTATATTAGVAATSTTASVLHSLTPPEPRLSPPVAKVAKPMHMGRGSFPTMPVEVERIDIGEPGNTGAKSVVANKGLADYSSD
PPNVSASSPGLKNDDEHQDINIEDIFGSVLSDDENNAEEERVETGFDINIPHQNDTDDEIADVDDSGDEAEKGPNAAEALRAQVNAEGREGPTAAAALRAQVNAEGRDDQ
SSSSSSSGSGSGSSSGSSSGSSDSEGSDEDSVTSI

Clc07G04500 (gene) of Watermelon (cordophanus) v2 genome