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Clc07G04690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G04690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDEAD-box ATP-dependent RNA helicase 18
Genome locationClcChr07:5440510..5441749
RNA-Seq ExpressionClc07G04690
SyntenyClc07G04690
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS33574.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Actinidia rufa]2.3e-0630.41Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF
        +F+  VGRT RLGREGAA VFLLPK +      ++R +P++ER C     +   P ++ H+                ++ K D DVM KG+++F+S ++ 
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF

Query:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
          E        W   E+G  G+ F      +  +  +H   T+GF+ +
Subjt:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
KAG0478599.1 hypothetical protein HPP92_013318 [Vanilla planifolia]6.5e-0640.62Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT R+GR+G+A VFLLPK        KLR +PIQER C        FP  L  +S+            + ++ K D DVM KG+K+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
PIA59544.1 hypothetical protein AQUCO_00400438v1 [Aquilegia coerulea]1.1e-0831.85Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFISV---
        +F+  VGRT R GR G A VFLLPK +      ++R +P++ER CC  V     P ++  +                ++ K D DVM KGVK+F+S    
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFISV---

Query:  --------------------------------QFQVERTWNREVGHGLWFVAAAFDA
                                          QVER  + EVGHG+WFV A +DA
Subjt:  --------------------------------QFQVERTWNREVGHGLWFVAAAFDA
PSS33280.1 DEAD-box ATP-dependent RNA helicase [Actinidia chinensis var. chinensis]2.3e-0630.41Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF
        +F+  VGRT RLGREGAA VFLLPK +      ++R +P++ER C     +   P ++ H+                ++ K D DVM KG+++F+S ++ 
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF

Query:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
          E        W   E+G  G+ F      +  +  +H   T+GF+ +
Subjt:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
XP_022146827.1 DEAD-box ATP-dependent RNA helicase 18 [Momordica charantia]1.3e-0640.62Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT RLGREG A VFLLPK +      ++R +PIQERNCC    +                  V+++  +  + K D DVM KGVK+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
TrEMBL top hitse value%identityAlignment
A0A2G5EUZ4 Uncharacterized protein5.2e-0931.85Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFISV---
        +F+  VGRT R GR G A VFLLPK +      ++R +P++ER CC  V     P ++  +                ++ K D DVM KGVK+F+S    
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFISV---

Query:  --------------------------------QFQVERTWNREVGHGLWFVAAAFDA
                                          QVER  + EVGHG+WFV A +DA
Subjt:  --------------------------------QFQVERTWNREVGHGLWFVAAAFDA
A0A2R6RTD0 DEAD-box ATP-dependent RNA helicase1.1e-0630.41Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF
        +F+  VGRT RLGREGAA VFLLPK +      ++R +P++ER C     +   P ++ H+                ++ K D DVM KG+++F+S ++ 
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF

Query:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
          E        W   E+G  G+ F      +  +  +H   T+GF+ +
Subjt:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
A0A443NS09 DEAD-box ATP-dependent RNA helicase 183.2e-0638.54Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT R+GR G A VFLLPK        ++R +P+QERNCC   V+   P +L                   ++ K D DVM KG+K+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
A0A6J1D0N8 DEAD-box ATP-dependent RNA helicase 186.4e-0740.62Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT RLGREG A VFLLPK +      ++R +PIQERNCC    +                  V+++  +  + K D DVM KGVK+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
A0A7J0DEJ1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-0630.41Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF
        +F+  VGRT RLGREGAA VFLLPK +      ++R +P++ER C     +   P ++ H+                ++ K D DVM KG+++F+S ++ 
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS-VQF

Query:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
          E        W   E+G  G+ F      +  +  +H   T+GF+ +
Subjt:  QVER------TWNR-EVGH-GLWFVAAAFDARGKANNHIRPTKGFSKI
SwissProt top hitse value%identityAlignment
Q8GXD6 DEAD-box ATP-dependent RNA helicase 499.8e-0530.21Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT R+ R+G A VFL+PK        ++R +P+QER C                 N   +  ++R L +      D  V+ KG+++F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
Q9FLB0 DEAD-box ATP-dependent RNA helicase 181.3e-0431.25Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F    GRT RLGR+G A VFLLPK +      ++R +P++ER C                 +   +  ++R   +      D  VM KG+K+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
Arabidopsis top hitse value%identityAlignment
AT1G71370.1 DEA(D/H)-box RNA helicase family protein7.0e-0630.21Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F+  VGRT R+ R+G A VFL+PK        ++R +P+QER C                 N   +  ++R L +      D  V+ KG+++F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPK------VKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
AT5G05450.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein9.1e-0631.25Show/hide
Query:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS
        +F    GRT RLGR+G A VFLLPK +      ++R +P++ER C                 +   +  ++R   +      D  VM KG+K+F+S
Subjt:  LFLRCVGRTDRLGREGAAFVFLLPKVK------KLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAAAAGAAATCAGAGTATAATATGATCTTCCTCAATATCCTTCTGTTTTTGCGTTGTGTTGGTCGAACTGATCGATTGGGCAGAGAAGGAGCTGCGTTTGTTTT
CCTTTTGCCGAAGGTGAAGAAGCTTAGGGAGATTCCTATACAAGAGAGAAATTGCTGTGGTGTTGTTGTAAATGGAACATTTCCATTCCTTCTTATACATCTTAGCAATA
ACAAAATCATATTTGGTGTCATGCGAAAACTCGTTTTAGATAACAGCTACAAAACGGATCATGATGTCATGGGGAAGGGAGTTAAGTCATTCATTTCTGTTCAATTTCAG
GTCGAAAGAACATGGAATAGGGAAGTAGGCCATGGGTTATGGTTTGTTGCAGCTGCATTTGATGCCCGAGGTAAAGCAAACAATCACATACGACCGACCAAGGGATTTTC
GAAGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAAAAGAAATCAGAGTATAATATGATCTTCCTCAATATCCTTCTGTTTTTGCGTTGTGTTGGTCGAACTGATCGATTGGGCAGAGAAGGAGCTGCGTTTGTTTT
CCTTTTGCCGAAGGTGAAGAAGCTTAGGGAGATTCCTATACAAGAGAGAAATTGCTGTGGTGTTGTTGTAAATGGAACATTTCCATTCCTTCTTATACATCTTAGCAATA
ACAAAATCATATTTGGTGTCATGCGAAAACTCGTTTTAGATAACAGCTACAAAACGGATCATGATGTCATGGGGAAGGGAGTTAAGTCATTCATTTCTGTTCAATTTCAG
GTCGAAAGAACATGGAATAGGGAAGTAGGCCATGGGTTATGGTTTGTTGCAGCTGCATTTGATGCCCGAGGTAAAGCAAACAATCACATACGACCGACCAAGGGATTTTC
GAAGATATAA
Protein sequenceShow/hide protein sequence
MQKKKSEYNMIFLNILLFLRCVGRTDRLGREGAAFVFLLPKVKKLREIPIQERNCCGVVVNGTFPFLLIHLSNNKIIFGVMRKLVLDNSYKTDHDVMGKGVKSFISVQFQ
VERTWNREVGHGLWFVAAAFDARGKANNHIRPTKGFSKI