CuGenDBv2

Gene ID	Clc07G05080
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	40S ribosomal protein S26
Genome location	ClcChr07:6338775..6342083
RNA-Seq Expression	Clc07G05080
Synteny	Clc07G05080
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0019430 - removal of superoxide radicals (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-62

93.23

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAK------PGQPGQAPRPVGAGNPAR
        +RRR+DQ K      PGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAK------PGQPGQAPRPVGAGNPAR

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]

8.9e-66

100

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRREDQAKPGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

5.4e-63

95.38

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAK---PGQPGQAPRPVGAGNPAR
        +RRR+DQ K   PGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAK---PGQPGQAPRPVGAGNPAR

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]

2.4e-63

96.85

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRR+DQ KPGQPGQAPRP GAG PAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

XP_023529394.1 40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]

2.4e-63

96.85

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRR+DQ KPGQPGQAPRP GAG PAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM45 40S ribosomal protein S26

4.3e-66

100

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRREDQAKPGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

A0A1S3C5M1 40S ribosomal protein S26

4.3e-66

100

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRREDQAKPGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

A0A5A7VIJ0 40S ribosomal protein S26

4.3e-66

100

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRREDQAKPGQPGQAPRPVGAGNPAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

A0A6J1FWD9 40S ribosomal protein S26

1.2e-63

96.85

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRR+DQ KPGQPGQAPRP GAG PAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

A0A6J1JIN0 40S ribosomal protein S26

1.2e-63

96.85

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPAR
        IRRR+DQ KPGQPGQAPRP GAG PAR
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPAR

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

8.2e-38

68.07

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRP
          +R   A+PG PG  PRP
Subjt:  IRRREDQAKPGQPGQAPRP

P49206 40S ribosomal protein S26-1

4.8e-54

83.33

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KPGQPGQAPRP G G  A
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

P49216 40S ribosomal protein S26

3.0e-48

76.38

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQP-GQAPRPVGAGNPA
         RRRED+ +  +P G AP P GA  PA
Subjt:  IRRREDQAKPGQP-GQAPRPVGAGNPA

Q8LPJ7 40S ribosomal protein S26-2

4.8e-54

83.33

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KPGQPGQAPRP G G  A
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

Q9LYK9 40S ribosomal protein S26-3

1.4e-53

84.13

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KP QPGQAPRP G G PA
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

3.4e-55

83.33

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KPGQPGQAPRP G G  A
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

AT2G40590.1 Ribosomal protein S26e family protein

3.4e-55

83.33

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KPGQPGQAPRP G G  A
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

AT3G56340.1 Ribosomal protein S26e family protein

9.8e-55

84.13

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Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF
        TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF

Query:  IRRREDQAKPGQPGQAPRPVGAGNPA
         RR+ED  KP QPGQAPRP G G PA
Subjt:  IRRREDQAKPGQPGQAPRPVGAGNPA

Sequences

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CDS sequence

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ATGCGTTTACCGACTTTCAAGCGCAGGAATGGCGGACGTAACAAGCATGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGAAAATGCTGCCCTAAG
GACAAGGCTATTAAGAGGTTTCTCGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATATACTCTTCCTAAGCTT
TATGCGAAGATGCAGTACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGATAGAAGAAATCGGCAACCACCACAACGTTTCATC
AGACGCAGGGAGGATCAGGCAAAACCTGGTCAGCCAGGGCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCCCGTGGGCAACGGGAAAGGACGAACTAA

mRNA sequence

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Protein sequence

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MRLPTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFI
RRREDQAKPGQPGQAPRPVGAGNPARGQRERTN

Clc07G05080 (gene) of Watermelon (cordophanus) v2 genome