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Clc07G05280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G05280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr07:6698423..6699591
RNA-Seq ExpressionClc07G05280
SyntenyClc07G05280
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011655051.1 uncharacterized protein LOC105435471 [Cucumis sativus]6.0e-5481.56Show/hide
Query:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWL-RRRAQAAA-PRCVGQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA
        MQ+SASL I PPPPP LHRPSTA FP  RPTP  SSPWL  R A+A A PRCV QGGWG S  V E+DIEEWLKLGRLEEKCGGGGKG+VELLECLE+EA
Subjt:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWL-RRRAQAAA-PRCVGQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA

Query:  IMGEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        IMGEDEGRDPTDYNRRAKIFSTSS+VFQALKQHSDA +PPP
Subjt:  IMGEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

XP_022942933.1 uncharacterized protein LOC111447817 [Cucurbita moschata]3.3e-5280.74Show/hide
Query:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE
        VSASLI  PP PPF HR ST VF   RP    S  WL RR  AAAPRCV QGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIMGEDE
Subjt:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE

Query:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        GR+PTDYNRRAKIFSTSS+VFQALKQHSDAA  PP
Subjt:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

XP_022988679.1 uncharacterized protein LOC111485933 [Cucurbita maxima]1.9e-5280.6Show/hide
Query:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE
        VSASLII PP P F HR ST VFP  RP    S PW  RR  AAAPRCV QGGWGGSVAE +IEEWLKLGRL+EKCGGGGKG+VELLECLEREAIMGEDE
Subjt:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE

Query:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP
        GR+PTDYNRRAKIFSTSS+VFQALKQHSDAA  P
Subjt:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP

XP_023547061.1 uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo]8.7e-5381.95Show/hide
Query:  SASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEG
        SASLII PP PPFLHR ST  FP  RP    S PW  RR  AAAPRCV QGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIMGEDEG
Subjt:  SASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEG

Query:  RDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP
        R+PTDYNRRAKIFSTSS+VFQALKQHSDAA  P
Subjt:  RDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP

XP_038892559.1 uncharacterized protein LOC120081603 [Benincasa hispida]2.1e-6288.32Show/hide
Query:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGE
        MQVSASLII PPPPP  HRPSTAVFP FRPTPP SSPWLR RA A  PRCV QGGWGGSVAELDIEEWLK G+LEEKCGGGGKG+VELLECLE+EAIMGE
Subjt:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGE

Query:  DEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        DEG+DPTDYNRRAKIFSTSSKVFQALKQHSDAA+PPP
Subjt:  DEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

TrEMBL top hitse value%identityAlignment
A0A0A0KQQ4 Uncharacterized protein2.9e-5481.56Show/hide
Query:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWL-RRRAQAAA-PRCVGQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA
        MQ+SASL I PPPPP LHRPSTA FP  RPTP  SSPWL  R A+A A PRCV QGGWG S  V E+DIEEWLKLGRLEEKCGGGGKG+VELLECLE+EA
Subjt:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWL-RRRAQAAA-PRCVGQGGWGGS--VAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREA

Query:  IMGEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        IMGEDEGRDPTDYNRRAKIFSTSS+VFQALKQHSDA +PPP
Subjt:  IMGEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

A0A1S3C540 uncharacterized protein LOC1034967605.7e-5077.7Show/hide
Query:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAA--PRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM
        MQ+SASLII   PPP L RPSTA FP  R TP  SSPWL  RA  A   PRCV QGGWG SVAE+DIEEWLKLGRLEEKCG GGKG+VELLECLE+EAIM
Subjt:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAA--PRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM

Query:  GEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        GEDEGR+PTDYNRRAKIFSTSS+VFQALKQH D  +PPP
Subjt:  GEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

A0A5D3DSR0 Uncharacterized protein5.7e-5077.7Show/hide
Query:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAA--PRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM
        MQ+SASLII   PPP L RPSTA FP  R TP  SSPWL  RA  A   PRCV QGGWG SVAE+DIEEWLKLGRLEEKCG GGKG+VELLECLE+EAIM
Subjt:  MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAA--PRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIM

Query:  GEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        GEDEGR+PTDYNRRAKIFSTSS+VFQALKQH D  +PPP
Subjt:  GEDEGRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

A0A6J1FW01 uncharacterized protein LOC1114478171.6e-5280.74Show/hide
Query:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE
        VSASLI  PP PPF HR ST VF   RP    S  WL RR  AAAPRCV QGGWGGSVAE +IEEWLKLGRLEEKCGGGGKG+VELLECLEREAIMGEDE
Subjt:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE

Query:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP
        GR+PTDYNRRAKIFSTSS+VFQALKQHSDAA  PP
Subjt:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPPP

A0A6J1JM89 uncharacterized protein LOC1114859339.4e-5380.6Show/hide
Query:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE
        VSASLII PP P F HR ST VFP  RP    S PW  RR  AAAPRCV QGGWGGSVAE +IEEWLKLGRL+EKCGGGGKG+VELLECLEREAIMGEDE
Subjt:  VSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDE

Query:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP
        GR+PTDYNRRAKIFSTSS+VFQALKQHSDAA  P
Subjt:  GRDPTDYNRRAKIFSTSSKVFQALKQHSDAASPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G05220.1 unknown protein6.9e-1642.19Show/hide
Query:  ILPPPPPFLHRPSTAVFPIFRPTPPTS-SPWLRRRAQAAAPRCVGQGG-WGGSVAELDIEEWLKLGRLEEKCGGG-GKGLVELLECLEREAIMGEDEGRD
        I+  P   +++ S+ V  I    P T  S  +++    AA RCV  G  +  ++  +  EE  +L +    CGG   +G+ ELLECLE+EAIMG D+GRD
Subjt:  ILPPPPPFLHRPSTAVFPIFRPTPPTS-SPWLRRRAQAAAPRCVGQGG-WGGSVAELDIEEWLKLGRLEEKCGGG-GKGLVELLECLEREAIMGEDEGRD

Query:  PTDYNRRAKIFSTSSKVFQALKQHSDAA
        P DYNRRAKIF  SSK+F+ L +  D A
Subjt:  PTDYNRRAKIFSTSSKVFQALKQHSDAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTCTCTGCATCTCTCATAATACTACCGCCACCACCACCCTTCCTCCACCGCCCCTCCACCGCCGTCTTCCCCATCTTCAGGCCAACTCCACCCACTTCCTCACC
ATGGCTCCGCCGTCGAGCTCAGGCGGCAGCGCCAAGATGTGTTGGTCAGGGTGGGTGGGGGGGATCTGTGGCGGAGCTGGACATAGAAGAGTGGCTGAAGCTAGGGAGGC
TGGAGGAGAAGTGCGGCGGCGGAGGGAAGGGATTGGTGGAGCTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCCTACAGATTATAAT
AGAAGAGCTAAGATTTTCAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTTCTCCTCCGCCCCTATCTTGA
mRNA sequenceShow/hide mRNA sequence
CACGTTCGTCTTCCAAACGGTGCCCAGTGGCGGTGCCTCTTTCTCTCTCTAAAAAAATTTCTTATAATACAAACTCCCTCTCCCAATACTCAAAAAGCCTATCATTTTTA
CCAAACCAACAATATGCAAGTCTCTGCATCTCTCATAATACTACCGCCACCACCACCCTTCCTCCACCGCCCCTCCACCGCCGTCTTCCCCATCTTCAGGCCAACTCCAC
CCACTTCCTCACCATGGCTCCGCCGTCGAGCTCAGGCGGCAGCGCCAAGATGTGTTGGTCAGGGTGGGTGGGGGGGATCTGTGGCGGAGCTGGACATAGAAGAGTGGCTG
AAGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGGAAGGGATTGGTGGAGCTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGATGAAGGTAGAGACCC
TACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTTCTCCTCCGCCCCTATCTTGATGATCAA
TCTAAAGAAACGGAAAGAAAAGAAGGATGAACATGTTCATATCATATCAAATCTTTATTCAGATTTACCAACTTATTTGATATTACATTTCTTTGAAAGAAACACTAGCT
TATTCATTAGTTTGCTCTTCCCTTTCTGCTTTCTCCTCCACCTCCCAAATCTTCTTCTTCAACCAATCAAATGGCTGCCAAGTTTTTCAGTTTCAAGAAGAGAAAAGTAG
TTATTATCTTCCACAAATAGCATCAGATGAACAAACAGAAACATGGTGGTAGATGAAAAGAGTCGGTGAAGTTTAAGACCAATACCTGTATAAGCCAAAGAGCAGTGGCT
GTACCAGCAACACTCCATAACAGAGCAGCTTCAATGTTGGTGGGATGCAGGAGATTCCGTAGCTTTGGACTGAGGAACTTCAACAAACCCTTTTCACCTGTCACCATTTC
TTTTATGTTTCTCTCTCTCTTCGCTCAGAAGGAGCCATACTTGTACCCATTTTAGTGAAATAAATCTTTGTTTGTTCTCATCACTTTTACGGATTTCTTTGTTGCTCACG
TGTCATTAAAACAGAGAGACAGAAAGAGAGAGAGTCTTCGAATCTGAATGCATCGAAGTTCATTTAATA
Protein sequenceShow/hide protein sequence
MQVSASLIILPPPPPFLHRPSTAVFPIFRPTPPTSSPWLRRRAQAAAPRCVGQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYN
RRAKIFSTSSKVFQALKQHSDAASPPPLS