CuGenDBv2

Gene ID	Clc07G05480
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	binding partner of ACD11 1-like
Genome location	ClcChr07:7293089..7298281
RNA-Seq Expression	Clc07G05480
Synteny	Clc07G05480
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142266.1 binding partner of ACD11 1 [Cucumis sativus]

1.6e-138

97.48

Show/hide

Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIA
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQV EKTKSALAVAEQKATSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_008452423.1 PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]

9.3e-139

97.48

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIA
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_008452424.1 PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo]

7.9e-138

97.46

Show/hide

Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        MRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIAPN
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_022941588.1 binding partner of ACD11 1-like isoform X3 [Cucurbita moschata]

4.0e-134

94.6

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRETENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSIL KRQTVTG A
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMD+ FQV+EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_038891484.1 binding partner of ACD11 1 [Benincasa hispida]

1.4e-139

98.2

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL K+QTV GIA
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR7 RRM domain-containing protein

7.7e-139

97.48

Show/hide

Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIA
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQV EKTKSALAVAEQKATSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A1S3BT66 binding partner of ACD11 1-like isoform X2

3.8e-138

97.46

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Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        MRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIAPN
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A1S3BUX7 binding partner of ACD11 1-like isoform X1

4.5e-139

97.48

Show/hide

Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIA
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A5A7UTK1 Binding partner of ACD11 1-like isoform X1

3.8e-138

97.46

Show/hide

Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        MRTVKVSNISK+TSERDIKEFFSFSGEILYVEMQRE+ENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSIL KRQTVTGIAPN
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMD+MFQVTEKTKSALAVAEQKATSAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A6J1FSI4 binding partner of ACD11 1-like isoform X3

2.0e-134

94.6

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSMRTVKVSNISK TSERDI+EFFSFSGEILYVEMQRETENTQVAYVTYK+SQGADTAILLTGAKIGDLSVTI LVENYHLPPEAMSSIL KRQTVTG A
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
        PNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMD+ FQV+EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYV TGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

5.2e-07

27.09

Show/hide

Query:  VKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPNQAE
        V V+NIS   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A +G   + IT  +             G +       P  A 
Subjt:  VKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPNQAE

Query:  DVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDQMFQVTEK---TKSALAVAEQKA--TSA
         ++S +L++G+ L    L K+   D+   ++S          +  GI E   +G   VN      EK  E+D  F +++K   T S ++    KA  T+A
Subjt:  DVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDQMFQVTEK---TKSALAVAEQKA--TSA

Query:  GTA
        GT+
Subjt:  GTA

Q9LFD5 Binding partner of ACD11 1

2.4e-57

50.76

Show/hide

Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLP--PEAMSSILGKRQTVTGIA
        +R+VKV N+S   +E DIKEFFSFSGE+  +++Q    N   AYVT+KE+QGA+TA+LL+GA I D SV I L  NY  P  P A +   G    V    
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLP--PEAMSSILGKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS
          +AEDVVS+MLAKGFILGKDA+ KAKAFDE+   TS A+A VAS+D+K+G+++K+TAGT++VNEK++ +DQ FQVTE+TKS  A AEQ  +SAG+A+M 
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE
        N YVLTG +W + A   V +AA EV Q TK   EK E E+     + +  +   ++ +H  E
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.1e-68

54.61

Show/hide

Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        ++TVK+SN+S + S++D+KEFFSFSG+I YVEM+ ET+ +QVAYVT+K+SQGA+TA+LLTGA I DL V+IT   NY LPPEA++  L    +  G +  
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++D+ +QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.1e-68

54.61

Show/hide

Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        ++TVK+SN+S + S++D+KEFFSFSG+I YVEM+ ET+ +QVAYVT+K+SQGA+TA+LLTGA I DL V+IT   NY LPPEA++  L    +  G +  
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++D+ +QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein

2.4e-68

54.24

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Query:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN
        ++TVK+SN+S + S++D+KEFFSFSG+I YVEM+ ET+ +QVAYVT+K+SQGA+TA+LLTGA I DL V+IT   NY LPPEA+ ++  +  +  G +  
Subjt:  MRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++D+ +QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.6e-70

56.39

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        M+M TVKVSN+S   ++RD+KEFFSFSG+ILY+E Q ETE T++AYVT+K+ QGA+TA+LL+GA I D SV +++  +Y L PEA++S+  K    +  A
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  PN----QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGT
         +    +AEDVVS+MLAKGFILGKDA+ KAK+ DE+ QLTS ASA VAS D+K+G T+KI  GT VV EKVRE+DQ +QV+EKTKSA+A AEQ  ++AG+
Subjt:  PN----QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGT

Query:  ALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE
        A+M N YVLTGA W + A   V KAAEEV Q  K KV  AEEE K         +++ FA +HL E
Subjt:  ALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.3e-69

54.07

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Query:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA
        MSM TVKVSN+S   +ERD+KEFFSFSG+I Y+E Q E + +++AYVT+K+ QGA+TA+LLTG+ I D SVT+T+  +Y LPP+A++SI   +++    +
Subjt:  MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIA

Query:  P--------NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKAT
        P         +AEDVVS M++KGF+LGKDA+ KAK+ DE+ QLTS ASA V S D+++G TEKI  GT VV+EKV+E+DQ FQVTEKTKSA+A AEQ  +
Subjt:  P--------NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKAT

Query:  SAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE
        +AG+A+M N YVLTGA W + A   V+KAAEEV Q  K KV  AEEE++     E+  +++  A +HL E
Subjt:  SAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDE

Sequences

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CDS sequence

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ATGTCGATGAGAACTGTCAAGGTCAGCAATATCTCAAAAGTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGTGAAATCCTATATGTTGAAATGCAAAG
AGAAACTGAAAATACTCAGGTTGCTTATGTTACTTATAAGGAGTCTCAAGGAGCAGATACTGCTATACTTTTGACTGGAGCAAAAATTGGTGATCTATCTGTAACAATTA
CTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCATCAATCCTGGGTAAAAGGCAAACTGTTACTGGGATTGCTCCGAATCAAGCTGAAGACGTCGTAAGTACA
ATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCGAATGCTTCTGCAACCGTTGCTTCCATAGA
CCGCAAGATGGGAATAACCGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATCAAATGTTCCAAGTTACGGAAAAGACGAAATCTGCCC
TTGCCGTTGCCGAGCAGAAGGCAACGAGTGCTGGAACCGCACTCATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTGACAAAA
GCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCTGAGGAGGAGAAAAAGGAGAGTATATACCGTGAAAGAACAGGGATCATCAATAACTTCGCCGA
ACTCCATCTCGACGAGCCTTTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAG

mRNA sequence

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TGAAAATATTGTCCCTCTCCGGTATCGCTGCCGCTGGTACTAAAAAAACAAAAACGAAACAAGTTTGTAAACAAACCGTATCCGTTTCAAAAACCCCAAAAAAGAAAGGA
AAAAAGAACACTAAATTTCTCTCAACAATTTCTTCTCATTCTATCCGCCGTTTGGATCTCTCTCTCATCAACCATTTCATCATCTTCTTCCTTCTCTAATCTTTTCAGAA
ATGTCGATGAGAACTGTCAAGGTCAGCAATATCTCAAAAGTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGTGAAATCCTATATGTTGAAATGCAAAG
AGAAACTGAAAATACTCAGGTTGCTTATGTTACTTATAAGGAGTCTCAAGGAGCAGATACTGCTATACTTTTGACTGGAGCAAAAATTGGTGATCTATCTGTAACAATTA
CTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCATCAATCCTGGGTAAAAGGCAAACTGTTACTGGGATTGCTCCGAATCAAGCTGAAGACGTCGTAAGTACA
ATGCTTGCTAAGGGCTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCGAATGCTTCTGCAACCGTTGCTTCCATAGA
CCGCAAGATGGGAATAACCGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATCAAATGTTCCAAGTTACGGAAAAGACGAAATCTGCCC
TTGCCGTTGCCGAGCAGAAGGCAACGAGTGCTGGAACCGCACTCATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTGACAAAA
GCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCTGAGGAGGAGAAAAAGGAGAGTATATACCGTGAAAGAACAGGGATCATCAATAACTTCGCCGA
ACTCCATCTCGACGAGCCTTTACCAGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAGACAGGACGCCAAGATGACAACCGCAGCTGCAATAGTTGAAGGG
AAATAACAAAATTGGACTTTGTCTGAAAGAACCAGCTCCGCAAAGTTCTTAGCTCGATTCTCCAAATTCGAGTCAGCTCCAGCAGCTTTCAGGTAGAACCTAAGATAATT
TTCAAAAAAAGAAAATTAAATAAAGCATGTTATTCGCAGTAGATTCAAATTGTTAATGGGCGGAAGGAGTTTATTGAAAATGGATGCACGAAAGGGAAAACTTTTTCCCT
TCCCACCAATGGTCAAGTTAGTCAAAGGAAGATGTACCATAAGAAGTTGTAAACAGTTGGCAAGAAACAATGGAACTTTAAGACTTCTTCAACAAGCCATTCCATGCCAA
CAACTTCAGATCTTCTGTACGTGTTGCTCTCTACACGGATATTCCTTTGCTGCACCCTGAAATGCCCAAAAATAAAACAAATCAGTCCTATCATAGCTTTATAAATATAT
CCACCAAGCTCGAGACCCACCAGCTAGCTTGGATACCTTCTCAATTCACAAGGCTCTATTTAATTAAACAAATCACAATTATTTAACATTTTGCATGTAAATTGCAAGTC
AAAGATAAATGAAGGCTACAAAAGGAAGTTTGAGAAAGAGAAGAGAAGAAAAAGAATTGTTTTACATTTGACTCGACTTAGAGTTCTATATACAAGTCAAAGATAATGTT
TTCTTGGTGGGTCTCGGGTCTCTTCTGTGCACATGAATTGTTAACATAAGAACTGAAAGATAGTGTTATGGCAATATTCG

Protein sequence

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MSMRTVKVSNISKVTSERDIKEFFSFSGEILYVEMQRETENTQVAYVTYKESQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILGKRQTVTGIAPNQAEDVVST
MLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDQMFQVTEKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTK
AAEEVTQMTKVKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

Clc07G05480 (gene) of Watermelon (cordophanus) v2 genome