CuGenDBv2

Gene ID	Clc07G05970
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Genome location	ClcChr07:9932381..9932935
RNA-Seq Expression	Clc07G05970
Synteny	Clc07G05970
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005488 - binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4076429.1 unnamed protein product [Lactuca saligna]

8.5e-26

53.68

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Query:  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-----------------
        PSVSWFKNAESRLNHHLSGLFG                      WNLYAQNPDS +HLFGTS+GAGTAILTLLGGFH QTQSL                 
Subjt:  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-----------------

Query:  --------------CIKGLLEAHIPSGGRLGCGHKG
                       +K LL+AHIP GGRLG GHKG
Subjt:  --------------CIKGLLEAHIPSGGRLGCGHKG

KAF9825350.1 hypothetical protein H0E87_005072 [Populus deltoides]

1.9e-25

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

QZL38592.1 photosystem I P700 apoprotein A2 [Citrullus naudinianus]

1.9e-25

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

YP_004841782.1 photosystem I P700 apoprotein A2 [Cucumis melo subsp. melo]

1.9e-25

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

YP_009945416.1 photosystem I P700 apoprotein A2 [Sechium edule]

1.9e-25

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1T8 Photosystem I P700 chlorophyll a apoprotein A2

9.2e-26

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

A0A218KG43 Photosystem I P700 chlorophyll a apoprotein A2

9.2e-26

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

A0A6H0ERZ3 Photosystem I P700 chlorophyll a apoprotein A2

9.2e-26

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

A0A6S7KZ29 Photosystem I

4.1e-26

53.68

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Query:  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-----------------
        PSVSWFKNAESRLNHHLSGLFG                      WNLYAQNPDS +HLFGTS+GAGTAILTLLGGFH QTQSL                 
Subjt:  PSVSWFKNAESRLNHHLSGLFG----------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSL-----------------

Query:  --------------CIKGLLEAHIPSGGRLGCGHKG
                       +K LL+AHIP GGRLG GHKG
Subjt:  --------------CIKGLLEAHIPSGGRLGCGHKG

G3ETY4 Photosystem I P700 chlorophyll a apoprotein A2

9.2e-26

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

SwissProt top hits

e value

%identity

Alignment

P58385 Photosystem I P700 chlorophyll a apoprotein A2

8.0e-27

47.17

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Q14FF8 Photosystem I P700 chlorophyll a apoprotein A2

8.0e-27

47.17

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Q3BAP1 Photosystem I P700 chlorophyll a apoprotein A2

2.1e-27

47.8

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDS+NHLFGTS+GAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Q4VZN4 Photosystem I P700 chlorophyll a apoprotein A2

2.5e-28

49.06

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Q6EW49 Photosystem I P700 chlorophyll a apoprotein A2

8.0e-27

47.17

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        PSVSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDS++HLFGTS+GAGTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

4.8e-27

45.91

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Query:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH
        P VSWFKNAESRLNHHLSGLFG                                             WNLYAQNPDS++HLFGTS+G+GTAILTLLGGFH
Subjt:  PSVSWFKNAESRLNHHLSGLFG---------------------------------------------WNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFH

Query:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG
         QTQSL                                IK LLEAHIP GGRLG GHKG
Subjt:  LQTQSL-------------------------------CIKGLLEAHIPSGGRLGCGHKG

Sequences

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CDS sequence

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ATGTTGGATGATAATGTAGATGAAGTAACAATATCGAGCTATTCTCGGGCACCGAGCGTTTCCTGGTTTAAAAATGCCGAATCTCGTCTCAATCATCACTTGTCAGGACT
ATTCGGATGGAATCTTTATGCTCAAAACCCTGATTCAAATAATCATTTATTTGGTACTTCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCTGC
AAACGCAAAGTTTATGTATAAAAGGTCTTTTAGAAGCACATATTCCGTCGGGGGGACGATTGGGGTGTGGACATAAAGGTTGA

mRNA sequence

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Protein sequence

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MLDDNVDEVTISSYSRAPSVSWFKNAESRLNHHLSGLFGWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHLQTQSLCIKGLLEAHIPSGGRLGCGHKG

Clc07G05970 (gene) of Watermelon (cordophanus) v2 genome