CuGenDBv2

Gene ID	Clc07G06160
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA helicase
Genome location	ClcChr07:10901087..10910859
RNA-Seq Expression	Clc07G06160
Synteny	Clc07G06160
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003678 - DNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK29006.1 ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa]

7.3e-36

91.57

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQLARLFQMLE LGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

XP_008454766.1 PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo]

7.3e-36

91.57

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQLARLFQMLE LGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

XP_011659838.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativus]

1.6e-35

90.36

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+P SIKEADLARKR +FDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

XP_022150022.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica charantia]

8.1e-35

90.36

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGT IEKD LLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

XP_031742292.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativus]

1.6e-35

90.36

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+P SIKEADLARKR +FDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C041 DNA helicase

3.5e-36

91.57

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQLARLFQMLE LGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

A0A5D3DZB1 ATP-dependent DNA helicase-like protein RECG

3.5e-36

91.57

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQLARLFQMLE LGTRIEKDCLLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

A0A6J1D8T6 DNA helicase

3.9e-35

90.36

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGT IEKD LLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

A0A6J1D9K8 DNA helicase

3.9e-35

90.36

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGT IEKD LLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

A0A6J1IFJ2 DNA helicase

5.1e-35

87.95

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Query:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +GI+ALP+N+DPIPEDITQ FGLLRLHDAYNGIHQPKSI EADLARKRFIFDEFFYLQLARLFQMLEGLGT IEKD LLDK
Subjt:  LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

SwissProt top hits

e value

%identity

Alignment

F4INA9 ATP-dependent DNA helicase homolog RECG, chloroplastic

1.4e-26

67.9

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Query:  KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +  LP N+DPIP++IT+ FGL  L+DAY GIH+PK++ EADLARKR IFDEFFYLQLARL+QML+ LGT+IEKD LL+K
Subjt:  KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

O34942 ATP-dependent DNA helicase RecG

6.9e-05

37.5

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Query:  DALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQL
        D+LP   DP+PE + + + L   + A   +HQP++ +   LAR+RF+++EF   QL
Subjt:  DALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQL

Q55681 ATP-dependent DNA helicase RecG

4.3e-07

43.86

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Query:  DPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLE
        DP+P++I + + L+ L  A   IH P++ ++  LAR+R +FDEFFYLQL  L +  E
Subjt:  DPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLE

Arabidopsis top hits

e value

%identity

Alignment

AT2G01440.1 DEAD/DEAH box RNA helicase family protein

1.0e-27

67.9

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Query:  KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK
        + +  LP N+DPIP++IT+ FGL  L+DAY GIH+PK++ EADLARKR IFDEFFYLQLARL+QML+ LGT+IEKD LL+K
Subjt:  KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDK

Sequences

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CDS sequence

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ATGAACCTTTTAAAAGGCATAGATGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTACGTCTTCATGATGCATATAAT
GGAATTCATCAGCCAAAGAGTATAAAGGAAGCTGATTTGGCACGCAAACGTTTTATATTTGACGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTT
GAAGGTCTCGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAAGAGTCAGATGAAAGCTGTTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAA
TAG

mRNA sequence

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Protein sequence

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MNLLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKESDESCCRNYMGFEATNSYE

Clc07G06160 (gene) of Watermelon (cordophanus) v2 genome