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Clc07G06515 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G06515
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr07:13121722..13122063
RNA-Seq ExpressionClc07G06515
SyntenyClc07G06515
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018858536.1 uncharacterized protein LOC109020516 [Juglans regia]6.1e-0435.14Show/hide
Query:  GEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA
        G FKLN+D A   + +  G+G ++RDS G V+++ A+    G+ A+E+E LA L GL+  + + +  L++E+++
Subjt:  GEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]6.1e-0434.51Show/hide
Query:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH
        + YL+ +R AQ+    P     V   +   S        G  KLNIDAA+   S ++G+GAVIR+  G V+ A +  I     + E+EA A   G+  V 
Subjt:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH

Query:  QMAVLILLVETNA
        Q  + I +VET+A
Subjt:  QMAVLILLVETNA

XP_030500317.1 uncharacterized protein LOC115715782 [Cannabis sativa]7.9e-0431.86Show/hide
Query:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH
        +AYLN F++       P +   V       SP       G+ K+N+DAA      R G+G+++RDS+GSVV   ++ I   + + E+EA A   GL+   
Subjt:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH

Query:  QMAVLILLVETNA
         + + I  VET++
Subjt:  QMAVLILLVETNA

XP_041016296.1 uncharacterized protein LOC121258801 [Juglans microcarpa x Juglans regia]6.1e-0438.89Show/hide
Query:  FKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA
        FKLN+D A  +D+ + G+GAV+RD +G V++A ++  P    A  VE LA L GL+   QM +  +++E+++
Subjt:  FKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA

XP_042942822.1 uncharacterized protein LOC122277005 [Carya illinoinensis]7.9e-0434.88Show/hide
Query:  VGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA
        +GI P R+      FKLN+D A+  +    G+GA++RDS G V+++ A+   + ++ +EVEALA L GL+    + +  L++E+++
Subjt:  VGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA

TrEMBL top hitse value%identityAlignment
A0A2I4HQV1 uncharacterized protein LOC1090205162.9e-0435.14Show/hide
Query:  GEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA
        G FKLN+D A   + +  G+G ++RDS G V+++ A+    G+ A+E+E LA L GL+  + + +  L++E+++
Subjt:  GEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVLILLVETNA

A0A803P0J9 Uncharacterized protein1.0e-0438.05Show/hide
Query:  NEFREAQVALVFPTLFV----DVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH
        N F   Q  L  PT  V     ++RQ   I P+     SG +KLN+DAA    S  +G+GA++RD+ G+VV A ++ I     + E+EA A   GL  V 
Subjt:  NEFREAQVALVFPTLFV----DVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH

Query:  QMAVLILLVETNA
        QM + I  +ET+A
Subjt:  QMAVLILLVETNA

A0A803P623 Uncharacterized protein2.9e-0434.51Show/hide
Query:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH
        + YL+ +R AQ+    P     V   +   S        G  KLNIDAA+   S ++G+GAVIR+  G V+ A +  I     + E+EA A   G+  V 
Subjt:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH

Query:  QMAVLILLVETNA
        Q  + I +VET+A
Subjt:  QMAVLILLVETNA

A0A803PK99 Uncharacterized protein3.8e-0433.63Show/hide
Query:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH
        + YL E++ A+ A         +N     ++P  L+  SG  KLN DAA    +   G GA++RDSNG VV A +   P+      +EALA  F L+ + 
Subjt:  MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVH

Query:  QMAVLILLVETNA
        +M + I  +ET++
Subjt:  QMAVLILLVETNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATCTCAATGAGTTTCGGGAGGCTCAGGTGGCTTTAGTGTTTCCAACTCTTTTTGTTGATGTGAATCGGCAGACTGTTGGTATTTCTCCGGTTAGGTTG
TCGCTATCGAGTGGGGAGTTCAAGCTCAATATTGATGCTGCTTACTGTCATGATTCGATGAGAGTAGGGATGGGAGCAGTAATTAGAGATTCCAATGGATCGGTA
GTTTTGGCCACTGCTGAATGCATTCCAAATGGTGTTCTGGCGTTAGAGGTGGAAGCTTTGGCTCACTTATTTGGCTTGAAGGTGGTGCATCAGATGGCTGTTCTG
ATTCTCCTGGTCGAAACAAATGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATATCTCAATGAGTTTCGGGAGGCTCAGGTGGCTTTAGTGTTTCCAACTCTTTTTGTTGATGTGAATCGGCAGACTGTTGGTATTTCTCCGGTTAGGTTG
TCGCTATCGAGTGGGGAGTTCAAGCTCAATATTGATGCTGCTTACTGTCATGATTCGATGAGAGTAGGGATGGGAGCAGTAATTAGAGATTCCAATGGATCGGTA
GTTTTGGCCACTGCTGAATGCATTCCAAATGGTGTTCTGGCGTTAGAGGTGGAAGCTTTGGCTCACTTATTTGGCTTGAAGGTGGTGCATCAGATGGCTGTTCTG
ATTCTCCTGGTCGAAACAAATGCCTAA
Protein sequenceShow/hide protein sequence
MAYLNEFREAQVALVFPTLFVDVNRQTVGISPVRLSLSSGEFKLNIDAAYCHDSMRVGMGAVIRDSNGSVVLATAECIPNGVLALEVEALAHLFGLKVVHQMAVL
ILLVETNA