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Clc07G06880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G06880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor UPBEAT1-like
Genome locationClcChr07:17556184..17556513
RNA-Seq ExpressionClc07G06880
SyntenyClc07G06880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056655.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.1e-3477.06Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDLENAVSS
         D ENAVSS
Subjt:  GDLENAVSS

KAG6607102.1 hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3582.83Show/hide
Query:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS
        WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+EELFQ+TADYIVLLKNQVFVLQRLIEFYGS + ENAVS+
Subjt:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS

KAG7036793.1 hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3076.77Show/hide
Query:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS
        WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+EELFQ+TADYI      VFVLQRLIEFYGS + ENAVS+
Subjt:  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS

PON40768.1 transcription factor UPBEAT-like protein [Parasponia andersonii]5.6e-1554.13Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDLENAVS
        S D E+AVS
Subjt:  SGDLENAVS

TYK04615.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]2.9e-3577.98Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDLENAVSS
         D ENAVSS
Subjt:  GDLENAVSS

TrEMBL top hitse value%identityAlignment
A0A2P5AW87 Transcription factor UPBEAT-like protein2.7e-1554.13Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDLENAVS
        S D E+AVS
Subjt:  SGDLENAVS

A0A2P5ED64 Uncharacterized protein1.8e-1453.21Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG
        MSS TK  +I    + RRT  R R   SR   A R+  NGG  C+S VS KLE+L+ LIP    +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYG
Subjt:  MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYG

Query:  SGDLENAVS
        S D E+AVS
Subjt:  SGDLENAVS

A0A5A7UT08 Transcription factor UPBEAT1-like5.3e-3577.06Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDLENAVSS
         D ENAVSS
Subjt:  GDLENAVSS

A0A5D3BZU8 Transcription factor UPBEAT1-like1.4e-3577.98Show/hide
Query:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS
        MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS
Subjt:  MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGS

Query:  GDLENAVSS
         D ENAVSS
Subjt:  GDLENAVSS

A0A5N6QW57 Uncharacterized protein8.8e-1445.95Show/hide
Query:  MSSITKKHRIPWKQS----TRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIE
        MSS  +K +   +++    TRRT  R R  +R  RARR+  NGG+ C + VS KLE+L++LIP  + +G   + ++LF++TA+YIVLL+ QV +LQRL+E
Subjt:  MSSITKKHRIPWKQS----TRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIE

Query:  FYGSGDLENAV
        FYGS  + N V
Subjt:  FYGSGDLENAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein1.8e-0641.86Show/hide
Query:  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFY
        K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EELFQ+TA+YIV L+ QV VL++LIE Y
Subjt:  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFY

AT5G39240.1 unknown protein1.3e-0942.55Show/hide
Query:  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD
        RSR G R  +   N +  G       S KL++L+SL+P  S             ED      E+LFQ+TADYIV L+ QV VLQ+LIE YGS D
Subjt:  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAA
AAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGT
TTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAA
AAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGT
TTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG
Protein sequenceShow/hide protein sequence
MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS