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Clc07G06925 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G06925
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationClcChr07:18219276..18221874
RNA-Seq ExpressionClc07G06925
SyntenyClc07G06925
Gene Ontology termsGO:0009536 - plastid (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN68611.1 Tetratricopeptide repeat-like superfamily protein [Prunus dulcis]2.8e-4057.47Show/hide
Query:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------
        PM RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +             
Subjt:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------

Query:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
                +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

BBN69936.1 Tetratricopeptide repeat-like superfamily protein, partial [Prunus dulcis]2.8e-4057.47Show/hide
Query:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------
        PM RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +             
Subjt:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------

Query:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
                +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

QOP62045.1 photosystem I assembly protein Ycf3 [Lilium pumilum]1.8e-3957.8Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGR--------GRSTTPRNQQHENFVINYPFSL---SGSEHRKMVG-------------
        MPRS  INGNFIDKT SIVANILLRIIPTTSGEK+AFTYYRDG           +T P    ++   I Y   L   S  EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGR--------GRSTTPRNQQHENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGRNL  YSDRGEQAI QGDSEIAEAWF+QA EYWKQAI LTPGNYIE  NWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

YP_009744688.1 hypothetical chloroplast RF34 [Prunus triloba]1.8e-3957.23Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------
        M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

YP_009758243.1 hypothetical chloroplast RF34 [Rubus amabilis]1.6e-4057.8Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------
        M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L      EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGRNLP YSDRGEQA++QGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

TrEMBL top hitse value%identityAlignment
A0A4Y1QZ78 Tetratricopeptide repeat-like superfamily protein8.7e-4057.23Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------
        M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

A0A5H2XXU4 Tetratricopeptide repeat-like superfamily protein1.3e-4057.47Show/hide
Query:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------
        PM RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +             
Subjt:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------

Query:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
                +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

A0A5H2Y7H7 Tetratricopeptide repeat-like superfamily protein (Fragment)1.3e-4057.47Show/hide
Query:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------
        PM RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L   S  EH K +             
Subjt:  PMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG------------

Query:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
                +  H Y SKGR+LP YSDRGEQA++QG SEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  -------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

A0A6G8QRP2 Photosystem I assembly protein Ycf37.9e-4157.8Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------
        M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L      EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGRNLP YSDRGEQA++QGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

A0A7T7D536 Hypothetical chloroplast RF347.9e-4157.8Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------
        M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG          +        ++   I Y   L      EH K +              
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ--------HENFVINYPFSL---SGSEHRKMVG-------------

Query:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
               +  H Y SKGRNLP YSDRGEQA++QGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  ------IINIHLYDSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

SwissProt top hitse value%identityAlignment
A0ZZ36 Photosystem I assembly protein Ycf38.7e-3756.14Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL
        MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG    +     +               ++   I Y   L   S  EH K +     + 
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL

Query:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        + +  RN  LP A+++       RGEQAIRQGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

Q2L906 Photosystem I assembly protein Ycf38.7e-3756.14Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL
        MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG    +     +               ++   I Y   L   S  EH K +     + 
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL

Query:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        + +  RN  LP A+++       RGEQAIRQGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

Q49KZ7 Photosystem I assembly protein Ycf38.7e-3756.14Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL
        MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG    +     +               ++   I Y   L   S  EH K +     + 
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL

Query:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        + +  RN  LP A+++       RGEQAIRQGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

Q4VZH4 Photosystem I assembly protein Ycf38.4e-4057.31Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL
        MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG    +     +               ++   I Y   L      EH K +     + 
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL

Query:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        + +  RN  LP A+++       RGEQAIRQGDSEIAEAWFNQA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

Q9MTP0 Photosystem I assembly protein Ycf38.7e-3756.14Show/hide
Query:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL
        MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG    +     +               ++   I Y   L   S  EH K +     + 
Subjt:  MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQ---------------HENFVINYPFSL---SGSEHRKMVGIINIHL

Query:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        + +  RN  LP A+++       RGEQAIRQGDSEIAEAWF+QA EYWKQAI LTPGNYIE QNWLKITR+
Subjt:  YDSKGRN--LP-AYSD-------RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-1885.42Show/hide
Query:  RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ
        RGEQAI+QGDSE+AEAWF QA EYWKQAITLTPGNYIE QNWL ITR+
Subjt:  RGEQAIRQGDSEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTGGTACCGATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGG
GGAAAAAGAGGCATTCACCTATTACAGAGATGGTAGGGGAAGAAGCACTACACCTAGGAATCAACAACACGAAAACTTTGTTATAAATTATCCCTTTTCCTTATCGGGAT
CGGAACATAGAAAAATGGTTGGGATAATAAACATCCATCTCTACGATTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGAT
TCTGAAATTGCAGAGGCTTGGTTCAATCAAGCCATTGAGTATTGGAAACAAGCGATAACACTTACTCCTGGTAATTATATTGAAGTCCAAAATTGGTTGAAGATCACAAG
GCAATTAGTTGGGGGCGGCAAAGCTCGAGTGTTACGAGAGGAAATTTACAGGATTGACTTGCCTGAGCATAGTCAAAGGCTAATGCTTTGTCTTCTCTTCTGTGGCTCAA
GCCAAATTTCCTCTTTCTTGGTGTATATACCTTACCCGCTCCTTAAGGGATGCCGGCTTGGTTGGAACCTTATGAAGGACCAAGCAACAGAACGTTATGGGGTAGTTCCA
AAGGAAATGACTGATGGTGTAGCCAAGGTTAATAAGGAATATGAGATGCTAGTCTTGGATTACGAAGAATCGATGGTTATTACTCTTTCGTTTTCTTATAGAATGGCTGA
AAAGTCAGGTAGCGAAGCCTTATGTTATGCTATTGAATGCGTTGTCGGAAGGATGTATGGGAGGATAGAATACCCGAGACTTGCTGCCAGAAAGAGCTCATTAGAGGCAT
TCCACTTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTGGTACCGATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGG
GGAAAAAGAGGCATTCACCTATTACAGAGATGGTAGGGGAAGAAGCACTACACCTAGGAATCAACAACACGAAAACTTTGTTATAAATTATCCCTTTTCCTTATCGGGAT
CGGAACATAGAAAAATGGTTGGGATAATAAACATCCATCTCTACGATTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGAT
TCTGAAATTGCAGAGGCTTGGTTCAATCAAGCCATTGAGTATTGGAAACAAGCGATAACACTTACTCCTGGTAATTATATTGAAGTCCAAAATTGGTTGAAGATCACAAG
GCAATTAGTTGGGGGCGGCAAAGCTCGAGTGTTACGAGAGGAAATTTACAGGATTGACTTGCCTGAGCATAGTCAAAGGCTAATGCTTTGTCTTCTCTTCTGTGGCTCAA
GCCAAATTTCCTCTTTCTTGGTGTATATACCTTACCCGCTCCTTAAGGGATGCCGGCTTGGTTGGAACCTTATGAAGGACCAAGCAACAGAACGTTATGGGGTAGTTCCA
AAGGAAATGACTGATGGTGTAGCCAAGGTTAATAAGGAATATGAGATGCTAGTCTTGGATTACGAAGAATCGATGGTTATTACTCTTTCGTTTTCTTATAGAATGGCTGA
AAAGTCAGGTAGCGAAGCCTTATGTTATGCTATTGAATGCGTTGTCGGAAGGATGTATGGGAGGATAGAATACCCGAGACTTGCTGCCAGAAAGAGCTCATTAGAGGCAT
TCCACTTCCAATGA
Protein sequenceShow/hide protein sequence
MGLVPMPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGRGRSTTPRNQQHENFVINYPFSLSGSEHRKMVGIINIHLYDSKGRNLPAYSDRGEQAIRQGD
SEIAEAWFNQAIEYWKQAITLTPGNYIEVQNWLKITRQLVGGGKARVLREEIYRIDLPEHSQRLMLCLLFCGSSQISSFLVYIPYPLLKGCRLGWNLMKDQATERYGVVP
KEMTDGVAKVNKEYEMLVLDYEESMVITLSFSYRMAEKSGSEALCYAIECVVGRMYGRIEYPRLAARKSSLEAFHFQ