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Clc07G07360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G07360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationClcChr07:19672967..19676257
RNA-Seq ExpressionClc07G07360
SyntenyClc07G07360
Gene Ontology termsGO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008906 - HAT, C-terminal dimerisation domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025331.1 transposase [Cucumis melo var. makuwa]1.1e-1735.71Show/hide
Query:  SFDTSSPLEKDD----EAIVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARY-RFGPNI-TNIKVRTVENV-----------LRCLFHE
        S +TS  +  +D       ++VD  + E   N +K RKN K S+VW+HFERLKGDP +P+A+    G  I  N+K   +E V            R LFHE
Subjt:  SFDTSSPLEKDD----EAIVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARY-RFGPNI-TNIKVRTVENV-----------LRCLFHE

Query:  YNNGQTGG--VCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDD--------------------------------MQ
        Y+  Q+G    C+S+S   + +V        SC  ++ +  ++ +  G +F  V D+I++ + EDD                                 +
Subjt:  YNNGQTGG--VCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDD--------------------------------MQ

Query:  VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
        +N  RF VL RM+RDIL+I VSTVAS+SAF+TGG V+++SRCSLAP+ V+AL
Subjt:  VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

XP_031739490.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis sativus]2.5e-0662.5Show/hide
Query:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF
        +A +NVDE EE++E  TKRR+N   SIVW+HFERLKGDP  PYAR ++
Subjt:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF

XP_031739490.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis sativus]3.9e-2038.95Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------
        FGP+I   K R VENVLR LFHEYN G + G C SSS  CS S+        S S S+ +  N+ H  G    + LD+ +D D++DD++           
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------

Query:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
                                               NE RF VLSR+SRDILAIPVST++S+S F+ GG V+N++RCS+AP+M+EAL
Subjt:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

XP_038888298.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Benincasa hispida]2.0e-2442.78Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQ-----------
        +GP+I   K+  VENVLR LFHEYN G       SSS  CS SV V    G S S S+ +  N+ H  GC+FP  LD+I+DVD++ D++           
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQ-----------

Query:  ------------------------------------------VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
                                                   N+ RF VLSR+SRDILAIPVSTVAS SAFS GG V+N++RCSLAPRMVEAL
Subjt:  ------------------------------------------VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

XP_038888298.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Benincasa hispida]4.2e-0660.42Show/hide
Query:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF
        +A +N+ E+EE++E  TKRR+N   SIVWEHFERLKGDP  PYAR ++
Subjt:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF

XP_038888298.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Benincasa hispida]2.0e-2442.78Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQ-----------
        +GP+I   K+  VENVLR LFHEYN G       SSS  CS SV V    G S S S+ +  N+ H  GC+FP  LD+I+DVD++ D++           
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQ-----------

Query:  ------------------------------------------VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
                                                   N+ RF VLSR+SRDILAIPVSTVAS SAFS GG V+N++RCSLAPRMVEAL
Subjt:  ------------------------------------------VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

XP_038888299.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Benincasa hispida]4.2e-0660.42Show/hide
Query:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF
        +A +N+ E+EE++E  TKRR+N   SIVWEHFERLKGDP  PYAR ++
Subjt:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF

XP_038888299.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Benincasa hispida]1.4e-2039.47Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------
        FGP+I   K R VEN LR LFHEYN G +   C SSS  CS SV        S S S+ +  N+ H   C   + LD+I+DVD++D+++           
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------

Query:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
                                               NE RF VLSR+SRDILAIPVSTV+S+S F+ GG V+N++RCS+AP+M+EAL
Subjt:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

TrEMBL top hitse value%identityAlignment
A0A1S4E5K1 zinc finger BED domain-containing protein RICESLEEPER 2-like1.9e-2038.95Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------
        FGP+I   K R VENVLR LFHEYN G + G C SSS  CS S+        S S S+ +  N+ H  G    + LD+ +D D++DD++           
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQV----------

Query:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
                                               NE RF VLSR+SRDILAIPVST++S+S F+ GG V+N++RCS+AP+M+EAL
Subjt:  ---------------------------------------NEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

A0A5A7SM58 Transposase5.2e-1835.71Show/hide
Query:  SFDTSSPLEKDD----EAIVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARY-RFGPNI-TNIKVRTVENV-----------LRCLFHE
        S +TS  +  +D       ++VD  + E   N +K RKN K S+VW+HFERLKGDP +P+A+    G  I  N+K   +E V            R LFHE
Subjt:  SFDTSSPLEKDD----EAIVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARY-RFGPNI-TNIKVRTVENV-----------LRCLFHE

Query:  YNNGQTGG--VCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDD--------------------------------MQ
        Y+  Q+G    C+S+S   + +V        SC  ++ +  ++ +  G +F  V D+I++ + EDD                                 +
Subjt:  YNNGQTGG--VCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDD--------------------------------MQ

Query:  VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
        +N  RF VL RM+RDIL+I VSTVAS+SAF+TGG V+++SRCSLAP+ V+AL
Subjt:  VNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

A0A5A7THP7 Transposase1.2e-1436.59Show/hide
Query:  SFDTSSPL-EKDDEA---IVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRFGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASS
        S++TS  + +KD  A    ++VD    E   N +K RKN K SIVW+HFERLKGDP +P A+               + V   +  E+ +  T      S
Subjt:  SFDTSSPL-EKDDEA---IVNVDE-DEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRFGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASS

Query:  SEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPR
        S+I                        D ++   N    + +  D D+    ++N  +F VL RM+RDIL I VST+ASKSAFSTGG V+++SRCSLAP+
Subjt:  SEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPR

Query:  MVEAL
        +VE L
Subjt:  MVEAL

A0A5D3E6G3 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.5e-1744.14Show/hide
Query:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDM----QVNEQRFV
        FGP+I   K R VENVLR LFHEYN G +      +         V ++ G + S    E+T        +   +LDS++  D   D+    + NE RF 
Subjt:  FGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDDM----QVNEQRFV

Query:  VLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL
        VLSR+SRDILAIPVST++S+S F+ GG V+N++RCS+AP+M+EAL
Subjt:  VLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEAL

A0A5D3E6G3 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.6e-0662.5Show/hide
Query:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF
        +A +NVDE EE++E  TKRR+N   SIVW+HFERLKGDP  PYAR ++
Subjt:  EAIVNVDEDEEINENSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRF

A0A5D3E6G3 Zinc finger BED domain-containing protein RICESLEEPER 3-like4.4e-1736.79Show/hide
Query:  NSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRFGPNITNIKVR-------------TVENVLRCLFHEYNNGQTGG--VCASSSEICSASVGVAVNAGA
        N  K RKN K S++W++FERLKGDP +P A+      I    ++              VE   RCLFHEY+  Q+G    C+S+S   + +V     +G 
Subjt:  NSTKRRKNNKTSIVWEHFERLKGDPTNPYARYRFGPNITNIKVR-------------TVENVLRCLFHEYNNGQTGG--VCASSSEICSASVGVAVNAGA

Query:  SCSPSSSESTND-----------------PHIRGCN--FPIVLDSII----DVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINAS
             S+E   +                 P  +G +     +L++ +    D D+    ++N  RF VL  M RDILAIPVSTVAS+SAFS GG V+++S
Subjt:  SCSPSSSESTND-----------------PHIRGCN--FPIVLDSII----DVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINAS

Query:  RCSLAPRMVEAL
         CSLAP+ VEAL
Subjt:  RCSLAPRMVEAL

SwissProt top hitse value%identityAlignment
P03010 Putative AC9 transposase8.3e-0550.98Show/hide
Query:  FVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEALYALK
        + +L++++RD+LAI VSTVAS+SAFS GG V++  R  L   +VEAL   K
Subjt:  FVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEALYALK

P08770 Putative AC transposase8.3e-0550.98Show/hide
Query:  FVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEALYALK
        + +L++++RD+LAI VSTVAS+SAFS GG V++  R  L   +VEAL   K
Subjt:  FVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEALYALK

Q6AVI0 Zinc finger BED domain-containing protein RICESLEEPER 29.2e-0445.71Show/hide
Query:  IIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVAS-KSAFS--TGGSVINASRCSLAPRMVEALYALK
        I + D+ +  ++N  +F  LSRM+RDILAIP+S V+S  S FS  TG  +++  R SL P +VEAL   K
Subjt:  IIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVAS-KSAFS--TGGSVINASRCSLAPRMVEALYALK

Q75HY5 Zinc finger BED domain-containing protein RICESLEEPER 32.4e-0438.67Show/hide
Query:  VLDSIIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASK----SAFSTGGSVINASRCSLAPRMVEALYALK
        ++  I D ++ +  ++N  +F  LS+M+RD+LAIP+S V+S     SA +TG  +++  R SL P  VEAL+  K
Subjt:  VLDSIIDVDLEDDMQVNEQRFVVLSRMSRDILAIPVSTVASK----SAFSTGGSVINASRCSLAPRMVEALYALK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTACGCAAGACGCAACGCACGACATGACTTCTCCCCTCCGGCTTCCCCTTTGTCCTTCAGCTCTTCTTCTTCTTCACTCTTTACCTATTCAACACAACTCCTCTC
CCCAGTCGACTACTCCCCTTATAGTGTAAAATACTTAAAAACGGCATGCAAGCTTTTTTCCCTCTGGTTCTCCCCTCACAGGCGTAAGTCTCTTCGTCTTCTTCACCTGC
GGTCCTTCGACACATCTTCACCTTTAGAAAAAGATGATGAGGCAATTGTCAATGTTGATGAAGATGAAGAAATCAATGAGAATTCAACAAAAAGGCGTAAGAACAATAAA
ACATCCATAGTTTGGGAACATTTTGAGCGTTTGAAAGGTGATCCTACTAACCCTTATGCTAGGTATCGTTTTGGGCCAAACATTACCAATATTAAAGTTAGAACAGTTGA
AAATGTTTTGAGGTGTCTTTTCCATGAATACAACAATGGGCAAACTGGTGGTGTTTGTGCTAGTTCTAGTGAGATTTGTAGTGCAAGTGTTGGTGTTGCTGTTAATGCAG
GTGCTAGTTGTAGTCCTAGTTCATCTGAATCTACTAATGATCCTCATATTCGTGGTTGTAATTTCCCAATTGTCTTGGATAGCATTATAGATGTAGATTTGGAAGATGAT
ATGCAAGTGAATGAGCAGAGATTTGTGGTTCTTAGTCGTATGAGTAGAGATATTTTGGCCATTCCTGTATCTACTGTAGCGTCTAAGTCAGCTTTTAGTACTGGAGGAAG
TGTGATTAATGCAAGTCGTTGCTCATTGGCTCCAAGAATGGTGGAGGCTCTTTATGCACTCAAAATTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTACGCAAGACGCAACGCACGACATGACTTCTCCCCTCCGGCTTCCCCTTTGTCCTTCAGCTCTTCTTCTTCTTCACTCTTTACCTATTCAACACAACTCCTCTC
CCCAGTCGACTACTCCCCTTATAGTGTAAAATACTTAAAAACGGCATGCAAGCTTTTTTCCCTCTGGTTCTCCCCTCACAGGCGTAAGTCTCTTCGTCTTCTTCACCTGC
GGTCCTTCGACACATCTTCACCTTTAGAAAAAGATGATGAGGCAATTGTCAATGTTGATGAAGATGAAGAAATCAATGAGAATTCAACAAAAAGGCGTAAGAACAATAAA
ACATCCATAGTTTGGGAACATTTTGAGCGTTTGAAAGGTGATCCTACTAACCCTTATGCTAGGTATCGTTTTGGGCCAAACATTACCAATATTAAAGTTAGAACAGTTGA
AAATGTTTTGAGGTGTCTTTTCCATGAATACAACAATGGGCAAACTGGTGGTGTTTGTGCTAGTTCTAGTGAGATTTGTAGTGCAAGTGTTGGTGTTGCTGTTAATGCAG
GTGCTAGTTGTAGTCCTAGTTCATCTGAATCTACTAATGATCCTCATATTCGTGGTTGTAATTTCCCAATTGTCTTGGATAGCATTATAGATGTAGATTTGGAAGATGAT
ATGCAAGTGAATGAGCAGAGATTTGTGGTTCTTAGTCGTATGAGTAGAGATATTTTGGCCATTCCTGTATCTACTGTAGCGTCTAAGTCAGCTTTTAGTACTGGAGGAAG
TGTGATTAATGCAAGTCGTTGCTCATTGGCTCCAAGAATGGTGGAGGCTCTTTATGCACTCAAAATTGGTTAA
Protein sequenceShow/hide protein sequence
MPYARRNARHDFSPPASPLSFSSSSSSLFTYSTQLLSPVDYSPYSVKYLKTACKLFSLWFSPHRRKSLRLLHLRSFDTSSPLEKDDEAIVNVDEDEEINENSTKRRKNNK
TSIVWEHFERLKGDPTNPYARYRFGPNITNIKVRTVENVLRCLFHEYNNGQTGGVCASSSEICSASVGVAVNAGASCSPSSSESTNDPHIRGCNFPIVLDSIIDVDLEDD
MQVNEQRFVVLSRMSRDILAIPVSTVASKSAFSTGGSVINASRCSLAPRMVEALYALKIG