CuGenDBv2

Gene ID	Clc07G07410
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Transcription initiation factor IIE subunit beta
Genome location	ClcChr07:19794418..19802054
RNA-Seq Expression	Clc07G07410
Synteny	Clc07G07410
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

1.9e-144

97.83

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SKSTPKFTPAPA SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

1.7e-145

97.83

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SKSTPKFTPAPA SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

1.7e-137

93.5

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ + +TP+FTPAPA S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

7.8e-138

93.86

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ + +TP+FTPAPA S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

4.0e-142

97.11

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQTTLSGIAA+KSASKSTPKFTPAPA S  RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

8.4e-146

97.83

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SKSTPKFTPAPA SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

9.3e-145

97.83

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SKSTPKFTPAPA SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

9.3e-145

97.83

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SKSTPKFTPAPA SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

8.5e-138

93.5

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ + +TP+FTPAPA S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

3.8e-138

93.86

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ + +TP+FTPAPA S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFR+IELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

P79011 Transcription initiation factor IIE subunit beta

2.4e-12

29.27

Show/hide

Query:  AQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRR--FSYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQA
        +Q+   ++ L E  +  T E+I  A Y+       + + L+ N +++YD R   F++K  H+++  + LL  +  +K   G+++ +L+D +P+V  +L+ 
Subjt:  AQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRR--FSYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQA

Query:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL
        L+  G+V LL +  D    + + ND      VD + +Q++ +I +P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+
Subjt:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL

Query:  TNAHL
        TN HL
Subjt:  TNAHL

Q54KJ8 General transcription factor IIE subunit 2

1.5e-14

26.47

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Query:  FKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSN-DTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVDINS
        FK+ Q +   TL+ I    S++ S  K+   P +S     + A + S+  T        +++ P    +  +++ L  LE   A T E ++   ++ I+ 
Subjt:  FKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSN-DTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVDINS

Query:  NKAVYDSLRNNPKVHYDGR-RFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDL
           + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L ++Y +   D++ LK + Q++ +   +S  DI +PND R+++ +  +L
Subjt:  NKAVYDSLRNNPKVHYDGR-RFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDL

Query:  KQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
          +++ I+LP +  D+EK+++  G+    +  +   +A+   S+K K ++KK    + TK+TN H+     N
Subjt:  KQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

4.5e-99

69.29

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAP-AVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA
        MAL+EQLD+F KQQ +CQ+TLS IA+S+  + S+ +  P P A++  +P A  VKFS+DTERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE 
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAP-AVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA

Query:  CYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI
        C+VD+++NKAV+DSLR NPK HYDGRRFSYK+ HD+ DK+QLL L+RK+ +GIAV+DLKDAYP+VMEDL+AL ASG ++LLSN  SQEDIAYPND + +I
Subjt:  CYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        KVDD+ K LFRDI +P DMLDVEK+L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Subjt:  KVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

1.0e-79

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MAL+EQLD+F KQQE+CQ+TLS I++S++A   +  + PA A +  +P     KFS +T++LQHI +IR S VGAQ+K VIDLL +TR A+T EQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI
        YVD+++NKAV+DSLR NPKVHYDGRRFSYK+ H++KDK QLL  + K  + I V DLKDAYP+VMEDL++LK+SG++ WLLSN DS+E   Y N+     
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        K+DD+LK LFRDI +P DML+VEK+L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Subjt:  KVDDDLKQLFRDIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTTGCAAGAACAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCATCCAAGTCTGCGTCCAAGTCTACACCCAAGTT
TACGCCTGCACCAGCTGTTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGAAAATCCCCTGTCG
GGGCTCAAATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTC
TATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTCGGAA
ATTTCCGGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTTG
ATTCACAAGAAGATATTGCATACCCAAATGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGATATTGAATTACCCCGTGACATGCTTGAT
GTCGAAAAGGATCTACAGAAGAATGGGATGAAGCCTGCAACCAACACAGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCAAAGCCAAAGAAAAAGAA
GCAAGAGATCAGCAAGAGAACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAG

mRNA sequence

Show/hide mRNA sequence

CCAAAACTGAAAATTGGTGAGTTCCTTCCCTGGACCGATGCTATATTTCATTTTAACCTTCCTCAAAGCACTCTTCCCTCATCTCTCTCTTTCTCCCTCGCGCTTTCCCA
ATTCCAGCTTCCATCTTCATTCTTCTCGATCTCCATAGCTGCACAAACCGAACTCGATTCAACAATCAACTCCATTGCGTATACTACATATATTAAACATCGACCCGCGA
TCCCACCGTCGTCTTATCCACGGCGGTTGATTCTGGTCTGCCTAACCGATGCAATTTGTGGGTTGAGAATAATTGAAAACTGTGAGAGGATTCAATGGCGTTGCAAGAAC
AACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCATCCAAGTCTGCGTCCAAGTCTACACCCAAGTTTACGCCTGCACCAGCT
GTTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGAAAATCCCCTGTCGGGGCTCAAATCAAGAG
GGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGA
ATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTCGGAAATTTCCGGAAGGCATT
GCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTTGATTCACAAGAAGATAT
TGCATACCCAAATGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGATATTGAATTACCCCGTGACATGCTTGATGTCGAAAAGGATCTAC
AGAAGAATGGGATGAAGCCTGCAACCAACACAGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCAAAGCCAAAGAAAAAGAAGCAAGAGATCAGCAAG
AGAACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAGAGAACCATATAGGCTGGGATGCAACAATAGTTATATGGTTCATTGACTCTGTAGATAAGATT
TCAACCATCCCTTCTGTTTGGTGTATTGCCTTTCTTTTCCATGAATATCATCATAGAATGAAAATGCTCCTGTGGTCTACTTTTGTGTATGTCTTTGCTTTTACATCAAT
TAATTGAACAAATTGAAATGTAAGATATATGTTCAATCAAACTAGATATATGATATTAGAAGTTTATCATATATACCAACTTTTGAATTATATTATTTCAAGTTGATTTG
GTTTTAGAAGAAATTGATATGTGCAGCATTACTTCTATTCCTTAATTTGCCGCAGGCCTGTTTGCTTGAAGAAGGTTGTACTGCTGATGCCTCCCTGTTTAGTTTGGTTT
TGGTTTTGGTTTTGGTTTTTGTACTTTCAATTATGATATTGATATAAATGTATTTTTTCACTATTA

Protein sequence

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MALQEQLDRFKKQQERCQTTLSGIAASKSASKSTPKFTPAPAVSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV
YDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFRDIELPRDMLD
VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Clc07G07410 (gene) of Watermelon (cordophanus) v2 genome