; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G07910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G07910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Genome locationClcChr07:20923045..20925828
RNA-Seq ExpressionClc07G07910
SyntenyClc07G07910
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027248 - Small nuclear ribonucleoprotein Sm D2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5030262.1 hypothetical protein JHK87_013776 [Glycine soja]2.7e-4883.47Show/hide
Query:  VPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD
        +P  N    +   F L ++     KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD
Subjt:  VPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD

Query:  RFISKMFLRGDSVIIVLRNPK
        RFISKMFLRGDSVIIVLRNPK
Subjt:  RFISKMFLRGDSVIIVLRNPK

KAG6577216.1 U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]6.6e-5562.98Show/hide
Query:  HLLLRSSSLFFATSPPTSPLPSPSVFFSASVPHYCVLKILHLTEILCTAIIEDLTPRTLLKIYLQLQDEPTNGGRCKFLQSFMLSFSVPPSNTCCLVGPA
        HLLLRSSSLFFATSPPTSP PSPSV FSAS                                        +  G C+   S     S P           
Subjt:  HLLLRSSSLFFATSPPTSPLPSPSVFFSASVPHYCVLKILHLTEILCTAIIEDLTPRTLLKIYLQLQDEPTNGGRCKFLQSFMLSFSVPPSNTCCLVGPA

Query:  FILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
             +    SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  FILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

RZB87954.1 putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]6.0e-4880.15Show/hide
Query:  FLQSFMLSFSVPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
        +L SF LSF     N   ++ P     +  + A KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Subjt:  FLQSFMLSFSVPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG

Query:  KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        KKK+QPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

XP_010269566.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera]7.8e-4897.03Show/hide
Query:  NHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        N   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Subjt:  NHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Query:  K
        K
Subjt:  K

XP_030543269.1 small nuclear ribonucleoprotein Sm D2-like isoform X1 [Rhodamnia argentea]1.0e-4798Show/hide
Query:  HASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        +A KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  HASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

TrEMBL top hitse value%identityAlignment
A0A0A0KUK4 Small nuclear ribonucleoprotein Sm D23.5e-5462.5Show/hide
Query:  HLLLRSSSLFFATSPPTSPLPSPSVFFSASVPHYCVLKILHLTEILCTAIIEDLTPRTLLKIYLQLQDEPTNGGRCKFLQSFMLSFSVPPSNTCCLVGPA
        HLLLRSSSLFFATSPP+SP PSPS+FFS +                                   LQ      G C    S   + S P           
Subjt:  HLLLRSSSLFFATSPPTSPLPSPSVFFSASVPHYCVLKILHLTEILCTAIIEDLTPRTLLKIYLQLQDEPTNGGRCKFLQSFMLSFSVPPSNTCCLVGPA

Query:  FILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
             +    SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Subjt:  FILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV

Query:  IIVLRNPK
        IIVLRNPK
Subjt:  IIVLRNPK

A0A1U8APN2 Small nuclear ribonucleoprotein Sm D23.8e-4897.03Show/hide
Query:  NHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        N   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Subjt:  NHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Query:  K
        K
Subjt:  K

A0A2N9FEF8 Small nuclear ribonucleoprotein Sm D22.2e-48100Show/hide
Query:  ASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        ASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  ASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A445IPN5 Small nuclear ribonucleoprotein Sm D22.9e-4880.15Show/hide
Query:  FLQSFMLSFSVPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
        +L SF LSF     N   ++ P     +  + A KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Subjt:  FLQSFMLSFSVPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG

Query:  KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        KKK+QPVNKDRFISKMFLRGDSVIIVLRNPK
Subjt:  KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

A0A445KSY3 Small nuclear ribonucleoprotein Sm D21.3e-4883.47Show/hide
Query:  VPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD
        +P  N    +   F L ++     KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD
Subjt:  VPPSNTCCLVGPAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD

Query:  RFISKMFLRGDSVIIVLRNPK
        RFISKMFLRGDSVIIVLRNPK
Subjt:  RFISKMFLRGDSVIIVLRNPK

SwissProt top hitse value%identityAlignment
P62316 Small nuclear ribonucleoprotein Sm D24.9e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D24.9e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q18786 Probable small nuclear ribonucleoprotein Sm D27.4e-4185.11Show/hide
Query:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Subjt:  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D24.9e-4589.58Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D21.1e-4487.63Show/hide
Query:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
        ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Subjt:  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hitse value%identityAlignment
AT2G47640.1 Small nuclear ribonucleoprotein family protein5.8e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.2 Small nuclear ribonucleoprotein family protein5.8e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.3 Small nuclear ribonucleoprotein family protein5.8e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT2G47640.4 Small nuclear ribonucleoprotein family protein5.8e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

AT3G62840.1 Small nuclear ribonucleoprotein family protein5.8e-4995.88Show/hide
Query:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
        K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Subjt:  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATTATTGTTCCTTGCGCGAACCATCTCGGTCATCTGCTCCTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCAACCTCGCCCTTGCCTTCTCCATCCGT
CTTCTTCTCCGCCTCCGTTCCGCATTATTGTGTTCTTAAGATATTGCATCTGACTGAAATATTATGCACTGCAATCATTGAAGACCTCACTCCAAGGACATTGCTGAAGA
TCTACCTCCAGTTACAAGATGAGCCGACCAATGGAGGAAGATGTAAGTTCCTTCAGTCTTTTATGCTTTCATTTTCAGTACCTCCATCCAATACATGTTGCCTAGTTGGT
CCAGCCTTTATCTTAGCACTGTTAATGAATCATGCTAGCAAGAATGAGGAAGAGGAATTTAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAACAACACTCA
GGTTCTCATAAATTGTCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTAC
CAAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCGGTCATTATCGTTCTTAGGAATCCCAAG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGAACATTATTGTTCCTTGCGCGAACCATCTCGGTCATCTGCTCCTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCAACCTCGCCCTTGCCTTCTCCATCCGT
CTTCTTCTCCGCCTCCGTTCCGCATTATTGTGTTCTTAAGATATTGCATCTGACTGAAATATTATGCACTGCAATCATTGAAGACCTCACTCCAAGGACATTGCTGAAGA
TCTACCTCCAGTTACAAGATGAGCCGACCAATGGAGGAAGATGTAAGTTCCTTCAGTCTTTTATGCTTTCATTTTCAGTACCTCCATCCAATACATGTTGCCTAGTTGGT
CCAGCCTTTATCTTAGCACTGTTAATGAATCATGCTAGCAAGAATGAGGAAGAGGAATTTAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAACAACACTCA
GGTTCTCATAAATTGTCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTAC
CAAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCGGTCATTATCGTTCTTAGGAATCCCAAG
TAA
Protein sequenceShow/hide protein sequence
MNIIVPCANHLGHLLLRSSSLFFATSPPTSPLPSPSVFFSASVPHYCVLKILHLTEILCTAIIEDLTPRTLLKIYLQLQDEPTNGGRCKFLQSFMLSFSVPPSNTCCLVG
PAFILALLMNHASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK