CuGenDBv2

Gene ID	Clc07G08105
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S11, chloroplastic
Genome location	ClcChr07:21339795..21340002
RNA-Seq Expression	Clc07G08105
Synteny	Clc07G08105
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006413 - translational initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR036967 - Ribosomal protein S11 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAD4981935.1 hypothetical protein E3N88_18606 [Mikania micrantha]

4.5e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

QYH50881.1 ribosomal protein S11 [Saussurea tanguensis]

3.4e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QT AENAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

YP_009634717.1 ribosomal protein S11 [Nyctanthes arbor-tristis]

4.5e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

YP_009752191.1 ribosomal protein S11 [Linnaeosicyos amara]

5.8e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

YP_009905930.1 ribosomal protein S11 [Vasconcellea cundinamarcensis]

5.8e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

TrEMBL top hits

e value

%identity

Alignment

A0A4D5Y202 30S ribosomal protein S11, chloroplastic

2.2e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

A0A5N6NML1 S1-like domain-containing protein

2.2e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

A0A6H0ETH3 30S ribosomal protein S11, chloroplastic

2.8e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

A0A6M3RIU1 30S ribosomal protein S11, chloroplastic

2.8e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QTTA NAIR VVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

A0A7D5QJ83 30S ribosomal protein S11, chloroplastic

2.8e-12

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

SwissProt top hits

e value

%identity

Alignment

A0ZZ68 30S ribosomal protein S11, chloroplastic

1.3e-14

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

B1A968 30S ribosomal protein S11, chloroplastic

2.9e-14

82.98

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

B2LMM6 30S ribosomal protein S11, chloroplastic

2.2e-14

82.98

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

Q2L937 30S ribosomal protein S11, chloroplastic

1.3e-14

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

Q6EW19 30S ribosomal protein S11, chloroplastic

1.3e-14

85.11

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00750.1 ribosomal protein S11

1.0e-14

80.85

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Query:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL
        SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EV IKGPGL
Subjt:  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL

Sequences

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CDS sequence

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ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGA
AAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGATCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

mRNA sequence

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ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGA
AAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGATCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

Protein sequence

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MTYNCDCYKRTGSSSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGLEFYH

Clc07G08105 (gene) of Watermelon (cordophanus) v2 genome