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Clc07G08905 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G08905
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II protein D1
Genome locationClcChr07:23142815..23143316
RNA-Seq ExpressionClc07G08905
SyntenyClc07G08905
Gene Ontology termsGO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0010242 - oxygen evolving activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000484 - Photosynthetic reaction centre, L/M
IPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACN39174.1 PsbA, partial [Eurhynchiella zeyheri]1.9e-1774.19Show/hide
Query:  TIVDYPNAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINS
        T+   PN F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLA++E PS+NS
Subjt:  TIVDYPNAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINS
AWI73056.1 photosystem II protein D1 [Lepiniopsis trilocularis]4.3e-1785.45Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
CBI31590.3 unnamed protein product, partial [Vitis vinifera]2.5e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
RVX13768.1 Photosystem II protein D1 [Vitis vinifera]2.5e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
YP_002608363.1 PSII 32 kDa protein [Vitis vinifera]2.5e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
TrEMBL top hitse value%identityAlignment
A0A438JXX2 Photosystem II protein D11.2e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
A0A654ICI4 Photosystem II protein D11.2e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
B6VJV1 Photosystem II protein D11.2e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
C0JL49 PsbA (Fragment)9.3e-1874.19Show/hide
Query:  TIVDYPNAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINS
        T+   PN F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLA++E PS+NS
Subjt:  TIVDYPNAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINS
F6HNS1 Photosystem II protein D11.2e-1779.31Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PSIN++A
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQA
SwissProt top hitse value%identityAlignment
A1E9Y8 Photosystem II protein D19.5e-2083.64Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+EVPSIN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
P05337 Photosystem II protein D11.6e-1981.82Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+EVP+IN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
P10510 Photosystem II protein D17.3e-2083.64Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+EVPSIN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
P12463 Photosystem II protein D17.3e-2083.64Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+EVPSIN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
Q2QDA8 Photosystem II protein D17.3e-2083.64Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+EVPSIN
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A5.7e-2080Show/hide
Query:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN
        N F+     VDSQGRVI+TWADIINRANLGMEVMHERNAHNFPLDLAA+E PS N
Subjt:  NAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSIN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATTGTGGATTATCCTAACGCTTTTGATATATTAACTCAACATGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCAGATATTATTAACCGTGCTAAT
CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTATTGAAGTTCCATCTATCAATAGTCAAGCTAGTTTAATAATAAGC
AATAAAATAAATACTAAGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAATTGTGGATTATCCTAACGCTTTTGATATATTAACTCAACATGTTGATAGTCAAGGTCGTGTAATTCATACCTGGGCAGATATTATTAACCGTGCTAAT
CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTATTGAAGTTCCATCTATCAATAGTCAAGCTAGTTTAATAATAAGC
AATAAAATAAATACTAAGTGTTGA
Protein sequenceShow/hide protein sequence
MTIVDYPNAFDILTQHVDSQGRVIHTWADIINRANLGMEVMHERNAHNFPLDLAAIEVPSINSQASLIISNKINTKC