CuGenDBv2

Gene ID	Clc07G09280
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	GTP-binding protein At3g49725, chloroplastic
Genome location	ClcChr07:23649759..23654657
RNA-Seq Expression	Clc07G09280
Synteny	Clc07G09280
Gene Ontology terms	GO:0005737 - cytoplasm (cellular component) GO:0005525 - GTP binding (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR016496 - GTPase HflX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056660.1 GTP-binding protein [Cucumis melo var. makuwa]

4.8e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

XP_008462905.1 PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X1 [Cucumis melo]

4.8e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

XP_022142222.1 GTP-binding protein At3g49725, chloroplastic [Momordica charantia]

3.7e-54

79.29

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Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL
        ML+IIS SQ R+K +A Y+ + C  STS L PSNSPS LLAP IW L SPFS+SSKQ KED+ DVVSVFNRDPTAP KLFVVQPRLR + FL+AKLNEAL
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL

Query:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARA+
Subjt:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

XP_038892861.1 GTP-binding protein At3g49725, chloroplastic isoform X1 [Benincasa hispida]

2.7e-57

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Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL
        MLRII      +KPLAHY++TVCSASTSYLLPSNSP+RLLAPWI  LSSPFSH SKQ KE SYDVVS+FNRDPTAPPKLFVVQPRLR NAFLQAKLNEAL
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL

Query:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        CLANSLEEQRDGYF  DFFDK+IPPHVVVQNPSARGARA+
Subjt:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

XP_038892869.1 GTP-binding protein At3g49725, chloroplastic isoform X2 [Benincasa hispida]

2.7e-57

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL
        MLRII      +KPLAHY++TVCSASTSYLLPSNSP+RLLAPWI  LSSPFSH SKQ KE SYDVVS+FNRDPTAPPKLFVVQPRLR NAFLQAKLNEAL
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL

Query:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        CLANSLEEQRDGYF  DFFDK+IPPHVVVQNPSARGARA+
Subjt:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CIG8 GTP-binding protein At3g49725, chloroplastic isoform X1

2.3e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

A0A1S3CJK3 GTP-binding protein At3g49725, chloroplastic isoform X2

2.3e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

A0A5A7UNL3 GTP-binding protein

2.3e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

A0A5D3C2J4 GTP-binding protein

2.3e-54

80.14

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA
        MLRIIS SQ RV PLAHY+ TVCSASTS LLPSN P SRLL PWI  LSSPFSHSSK  KED  D+VS+FNRD TAPPKLFVVQPRLR   FLQAKLNEA
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSP-SRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEA

Query:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        LCLANSLEEQRDGYF  DFFDK++PPHV+VQNPS RGARA+
Subjt:  LCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

A0A6J1CM56 GTP-binding protein At3g49725, chloroplastic

1.8e-54

79.29

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL
        ML+IIS SQ R+K +A Y+ + C  STS L PSNSPS LLAP IW L SPFS+SSKQ KED+ DVVSVFNRDPTAP KLFVVQPRLR + FL+AKLNEAL
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEAL

Query:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE
        CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARA+
Subjt:  CLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGARAE

SwissProt top hits

e value

%identity

Alignment

Q0WTB4 GTP-binding protein At3g49725, chloroplastic

1.3e-22

46.9

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFS---HSSK----QNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQ
        MLR +S ++ R++       T  S      L S +PS          SSPFS   H+ K    + +    D V +  +DP++ PKLF+VQPRL    +LQ
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFS---HSSK----QNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQ

Query:  AKLNEALCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGAR
        AKLNEALCLANSLEEQR GYF++DFFDKE+P HVVVQNP  R ++
Subjt:  AKLNEALCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGAR

Arabidopsis top hits

e value

%identity

Alignment

AT3G49725.1 GTP-binding protein, HflX

9.5e-24

46.9

Show/hide

Query:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFS---HSSK----QNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQ
        MLR +S ++ R++       T  S      L S +PS          SSPFS   H+ K    + +    D V +  +DP++ PKLF+VQPRL    +LQ
Subjt:  MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFS---HSSK----QNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQ

Query:  AKLNEALCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGAR
        AKLNEALCLANSLEEQR GYF++DFFDKE+P HVVVQNP  R ++
Subjt:  AKLNEALCLANSLEEQRDGYFDTDFFDKEIPPHVVVQNPSARGAR

Sequences

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CDS sequence

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ATGTTGAGAATCATCTCTCCATCGCAAACTCGCGTCAAGCCTCTCGCCCATTACATAACCACTGTATGTTCCGCCTCAACAAGCTATCTACTGCCATCTAATTCTCCTTC
GAGGCTGTTGGCTCCTTGGATTTGGACTCTCTCTTCGCCATTCTCGCACTCATCCAAACAGAACAAGGAAGATAGCTACGACGTTGTTTCCGTTTTCAACAGAGACCCAA
CAGCTCCGCCGAAACTCTTCGTGGTTCAACCTCGTCTTCGTTCTAACGCATTTCTTCAAGCAAAGCTAAACGAGGCTTTGTGTCTTGCAAATTCTCTTGAAGAACAACGA
GATGGGTATTTTGATACAGATTTCTTCGACAAGGAAATACCCCCTCACGTCGTTGTTCAAAATCCTTCAGCAAGAGGGGCTCGCGCTGAGCCCAGAAGACGGCTTGGGTA
A

mRNA sequence

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GTGGAATTTTGAACCATTTTCCAAACAACCGCCTACAACTACAGGCCACATCGCTTACTCTCTGTCGCGAGTTCGTAACCTGGCGGGAAGTGCACAAAGGCAACTCTCTG
GGCAGACCAACTTACCGACACCGAGAGTGTGGATACTGCTGAAAGGAGGTCGTCCGACTGATTCATCCAAATGTTGAGAATCATCTCTCCATCGCAAACTCGCGTCAAGC
CTCTCGCCCATTACATAACCACTGTATGTTCCGCCTCAACAAGCTATCTACTGCCATCTAATTCTCCTTCGAGGCTGTTGGCTCCTTGGATTTGGACTCTCTCTTCGCCA
TTCTCGCACTCATCCAAACAGAACAAGGAAGATAGCTACGACGTTGTTTCCGTTTTCAACAGAGACCCAACAGCTCCGCCGAAACTCTTCGTGGTTCAACCTCGTCTTCG
TTCTAACGCATTTCTTCAAGCAAAGCTAAACGAGGCTTTGTGTCTTGCAAATTCTCTTGAAGAACAACGAGATGGGTATTTTGATACAGATTTCTTCGACAAGGAAATAC
CCCCTCACGTCGTTGTTCAAAATCCTTCAGCAAGAGGGGCTCGCGCTGAGCCCAGAAGACGGCTTGGGTAA

Protein sequence

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MLRIISPSQTRVKPLAHYITTVCSASTSYLLPSNSPSRLLAPWIWTLSSPFSHSSKQNKEDSYDVVSVFNRDPTAPPKLFVVQPRLRSNAFLQAKLNEALCLANSLEEQR
DGYFDTDFFDKEIPPHVVVQNPSARGARAEPRRRLG

Clc07G09280 (gene) of Watermelon (cordophanus) v2 genome