; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G09360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G09360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUbiquitin
Genome locationClcChr07:23769926..23771761
RNA-Seq ExpressionClc07G09360
SyntenyClc07G09360
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038587 - Ribosomal protein L40e superfamily
IPR029071 - Ubiquitin-like domain superfamily
IPR019956 - Ubiquitin domain
IPR000626 - Ubiquitin-like domain
IPR001975 - Ribosomal protein L40e
IPR011332 - Zinc-binding ribosomal protein
IPR019954 - Ubiquitin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP88184.1 ubiquitin-60S ribosomal protein l40 [Phtheirospermum japonicum]1.0e-5391.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK          LRGGIIEPSLMALARKYNQDKMICRKC
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC

Query:  YARLHPRAVNCRKKKCGHSNQLK
        YARLHPRAVNCRKKKCGHSNQL+
Subjt:  YARLHPRAVNCRKKKCGHSNQLK

NP_001295699.1 ubiquitin-60S ribosomal protein L40-like [Jatropha curcas]1.3e-5391.8Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

PQQ19089.1 ubiquitin-60S ribosomal protein L40-like [Prunus yedoensis var. nudiflora]4.1e-5583.57Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGW----------------LRGGIIEPSLMALARKYNQ
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG                 LRGGIIEPSLMALARKYNQ
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGW----------------LRGGIIEPSLMALARKYNQ

Query:  DKMICRKCYARLHPRAVNCRKKKCGHSNQL----KLWLWA
        DKMICRKCYARLHPRAVNCRKKKCGHSNQL    KLW W+
Subjt:  DKMICRKCYARLHPRAVNCRKKKCGHSNQL----KLWLWA

RLN35112.1 hypothetical protein C2845_PM03G27700 [Panicum miliaceum]8.3e-5684.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQL-KLWLWAESYSDSVETM
        ARLHPRAVNCRKKKCGHSNQ+ K+W+W +     VE M
Subjt:  ARLHPRAVNCRKKKCGHSNQL-KLWLWAESYSDSVETM

XP_012844547.1 PREDICTED: ubiquitin-60S ribosomal protein L40-like [Erythranthe guttata]5.9e-5491.13Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG------W---LRGGIIEPSLMALARKYNQDKMICRK
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG      W   LRGGIIEPSLMALARKYNQDK ICRK
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG------W---LRGGIIEPSLMALARKYNQDKMICRK

Query:  CYARLHPRAVNCRKKKCGHSNQLK
        CYARLHPRAVNCRKKKCGHSNQL+
Subjt:  CYARLHPRAVNCRKKKCGHSNQLK

TrEMBL top hitse value%identityAlignment
A0A1U7X7W2 Ubiquitin6.4e-5491.8Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

A0A314ZIE0 Ubiquitin2.0e-5583.57Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGW----------------LRGGIIEPSLMALARKYNQ
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG                 LRGGIIEPSLMALARKYNQ
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGW----------------LRGGIIEPSLMALARKYNQ

Query:  DKMICRKCYARLHPRAVNCRKKKCGHSNQL----KLWLWA
        DKMICRKCYARLHPRAVNCRKKKCGHSNQL    KLW W+
Subjt:  DKMICRKCYARLHPRAVNCRKKKCGHSNQL----KLWLWA

A0A3L6TAD8 Ubiquitin4.0e-5684.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQL-KLWLWAESYSDSVETM
        ARLHPRAVNCRKKKCGHSNQ+ K+W+W +     VE M
Subjt:  ARLHPRAVNCRKKKCGHSNQL-KLWLWAESYSDSVETM

A0A3P5Y4W7 Ubiquitin4.9e-5491.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK          LRGGIIEPSLMALARKYNQDKMICRKC
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC

Query:  YARLHPRAVNCRKKKCGHSNQLK
        YARLHPRAVNCRKKKCGHSNQL+
Subjt:  YARLHPRAVNCRKKKCGHSNQLK

A0A3P6GK20 Ubiquitin4.9e-5491.06Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK          LRGGIIEPSLMALARKYNQDKMICRKC
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG--------WLRGGIIEPSLMALARKYNQDKMICRKC

Query:  YARLHPRAVNCRKKKCGHSNQLK
        YARLHPRAVNCRKKKCGHSNQL+
Subjt:  YARLHPRAVNCRKKKCGHSNQLK

SwissProt top hitse value%identityAlignment
B9DHA6 Ubiquitin-60S ribosomal protein L40-16.6e-5690.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

P0CH34 Ubiquitin-60S ribosomal protein L40-16.6e-5690.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

P0CH35 Ubiquitin-60S ribosomal protein L40-26.6e-5690.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

P49636 Ubiquitin-60S ribosomal protein L403.9e-5690.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCR+KKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

Q42202 Ubiquitin-60S ribosomal protein L40-26.6e-5690.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

Arabidopsis top hitse value%identityAlignment
AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e4.7e-5790.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

AT2G47110.1 ubiquitin 62.4e-2967.29Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK        E +L  + R     K   +K Y +  P+ 
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA

Query:  VNCRKKK
        +  + KK
Subjt:  VNCRKKK

AT2G47110.2 ubiquitin 62.4e-2967.29Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK        E +L  + R     K   +K Y +  P+ 
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA

Query:  VNCRKKK
        +  + KK
Subjt:  VNCRKKK

AT3G52590.1 ubiquitin extension protein 14.7e-5790.98Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK         LRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKG-------WLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLK
        ARLHPRAVNCRKKKCGHSNQL+
Subjt:  ARLHPRAVNCRKKKCGHSNQLK

AT3G62250.1 ubiquitin 52.4e-2967.29Show/hide
Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK        E +L  + R     K   +K Y +  P+ 
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRA

Query:  VNCRKKK
        +  + KK
Subjt:  VNCRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTTAAAGCTAAGATCCAGGATAAGGAAGGTATTCC
CCCGGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGGCGAACGCTCGCTGACTACAATATCCAGAAGGGTTGGCTTCGCGGTGGTATTATTGAGCCCT
CTTTGATGGCATTGGCTAGGAAGTACAACCAGGACAAGATGATTTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCCGTCAACTGCAGGAAAAAGAAGTGTGGACAC
AGCAACCAGTTAAAGCTATGGCTGTGGGCAGAATCTTATTCTGATTCAGTCGAAACGATGGGACATGTTGCTCAGAAGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGATACCATCGACAATGTTAAAGCTAAGATCCAGGATAAGGAAGGTATTCC
CCCGGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGGCGAACGCTCGCTGACTACAATATCCAGAAGGGTTGGCTTCGCGGTGGTATTATTGAGCCCT
CTTTGATGGCATTGGCTAGGAAGTACAACCAGGACAAGATGATTTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCCGTCAACTGCAGGAAAAAGAAGTGTGGACAC
AGCAACCAGTTAAAGCTATGGCTGTGGGCAGAATCTTATTCTGATTCAGTCGAAACGATGGGACATGTTGCTCAGAAGTCATAA
Protein sequenceShow/hide protein sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGWLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGH
SNQLKLWLWAESYSDSVETMGHVAQKS