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Clc07G09500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G09500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionInner centromere protein A isoform X2
Genome locationClcChr07:23949665..23959270
RNA-Seq ExpressionClc07G09500
SyntenyClc07G09500
Gene Ontology termsGO:0005776 - autophagosome (cellular component)
GO:0061908 - phagophore (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4115671.1 unnamed protein product [Lactuca saligna]6.7e-0925.5Show/hide
Query:  AMNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYIRK-VQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSE
        +M+      +W S +Y++FE+  ++VDE MNN+++KY+   +Q   E++ KFY+ + + ++ P        +    T +  SI  +     L+   +   
Subjt:  AMNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYIRK-VQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSE

Query:  ESAFGDSASECLSPTSSYIYASDASDVESTLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYF-----F
           F +            +Y S  S+ + +L  +  + DY++A            S Y  S  +S ++ + +++SS   F   +E  +   N        
Subjt:  ESAFGDSASECLSPTSSYIYASDASDVESTLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYF-----F

Query:  NKETNDLSHHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE---QCRQGTSLLAPHTMLLRDSQPIQSS-DFEWELL
        N +T DLS   +L +SCVIV+     +     S  + K  SYKK+I +AF S+ ++ KEYK+    C       +  T        +Q S D EWELL
Subjt:  NKETNDLSHHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE---QCRQGTSLLAPHTMLLRDSQPIQSS-DFEWELL

KAA0059021.1 uncharacterized protein E6C27_scaffold233G00420 [Cucumis melo var. makuwa]7.4e-3246.29Show/hide
Query:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST
        MS+ + ++Y        +  ES FGDSA+E  S TS     I+ + +S++      S +LPNKAFA YY ALHND  +IIK   + I S IDS       
Subjt:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST

Query:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ
                GSL+++ + +    FNKE NDLSH + LE++CVIVD+ST PHDD   VS E P Q S+K+ IL A   KKRLA EYK+          +C Q
Subjt:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ

Query:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL
        G SL AP TMLL+DS Q IQSSD EWELL
Subjt:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL

TYK19574.1 uncharacterized protein E5676_scaffold416G00800 [Cucumis melo var. makuwa]3.3e-3246.72Show/hide
Query:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST
        MS+ + ++Y        +  ES FGDSASE  S TS     I+ + +S++      S +LPNKAFA YY ALHND  +IIK   + I S IDS       
Subjt:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST

Query:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ
                GSL+++ + +    FNKE NDLSH + LE++CVIVD+ST PHDD   VS E P Q S+K+ IL A   KKRLA EYK+          +C Q
Subjt:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ

Query:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL
        G SL AP TMLL+DS Q IQSSD EWELL
Subjt:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL

XP_011654345.1 uncharacterized protein LOC105435348 [Cucumis sativus]4.9e-3658.72Show/hide
Query:  STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFSTPHDDDVVVS
        S +LPNKAF+ YY ALHND  DIIK   ++I+S IDSD NYSS  VSSI SFGSL+++ + +    FNKE NDLSH +ELE++CVIVD+   HDD   VS
Subjt:  STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFSTPHDDDVVVS

Query:  IEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQGTSLLAPHTMLLRDS-QPIQSSDFEWELL
         E P Q S+K+ I  AF S KRLA EYK+          +  QGTSL APHTMLLRDS Q IQSSD EWELL
Subjt:  IEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQGTSLLAPHTMLLRDS-QPIQSSDFEWELL

XP_017648283.1 PREDICTED: uncharacterized protein LOC108488517 isoform X1 [Gossypium arboreum]8.8e-0928.33Show/hide
Query:  MNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYI-RKVQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSEE
        M     G++W  N+Y+KFE++C +VD+++  E+++Y+  ++Q    NV +F ++L + +V+   D      ED++T         +Q  G V  S+DS  
Subjt:  MNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYI-RKVQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSEE

Query:  SAFGDSASECLSPTSSYIYASDASDVESTL--LPNKAFADYYTAL-HNDGIDIIKE--YSEYINSQI-DSDSNYSSTSVSSIQSFGSLDEFGNCETNY--
        SA  D +       +  +Y+S    VE     LP++ F +   +L H+ G        +S+   +++ D+DS    TS+ SI+    +      E ++  
Subjt:  SAFGDSASECLSPTSSYIYASDASDVESTL--LPNKAFADYYTAL-HNDGIDIIKE--YSEYINSQI-DSDSNYSSTSVSSIQSFGSLDEFGNCETNY--

Query:  FFNKETNDLS-HHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKEQ---CRQGTSLLAPHTMLLRDSQPIQSSDFEWELL
            E    S  + +LEESC+IVD S    + + VS    K  SYKK + +AFSSK R  K   EQ    RQ            R+SQ ++  + +WE++
Subjt:  FFNKETNDLS-HHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKEQ---CRQGTSLLAPHTMLLRDSQPIQSSDFEWELL

TrEMBL top hitse value%identityAlignment
A0A0A0KVL5 Uncharacterized protein2.4e-3658.72Show/hide
Query:  STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFSTPHDDDVVVS
        S +LPNKAF+ YY ALHND  DIIK   ++I+S IDSD NYSS  VSSI SFGSL+++ + +    FNKE NDLSH +ELE++CVIVD+   HDD   VS
Subjt:  STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFSTPHDDDVVVS

Query:  IEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQGTSLLAPHTMLLRDS-QPIQSSDFEWELL
         E P Q S+K+ I  AF S KRLA EYK+          +  QGTSL APHTMLLRDS Q IQSSD EWELL
Subjt:  IEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQGTSLLAPHTMLLRDS-QPIQSSDFEWELL

A0A0B0N7Q1 uncharacterized protein LOC108488517 isoform X14.3e-0928.33Show/hide
Query:  MNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYI-RKVQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSEE
        M     G++W  N+Y+KFE++C +VD+++  E+++Y+  ++Q    NV +F ++L + +V+   D      ED++T         +Q  G V  S+DS  
Subjt:  MNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYI-RKVQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSEE

Query:  SAFGDSASECLSPTSSYIYASDASDVESTL--LPNKAFADYYTAL-HNDGIDIIKE--YSEYINSQI-DSDSNYSSTSVSSIQSFGSLDEFGNCETNY--
        SA  D +       +  +Y+S    VE     LP++ F +   +L H+ G        +S+   +++ D+DS    TS+ SI+    +      E ++  
Subjt:  SAFGDSASECLSPTSSYIYASDASDVESTL--LPNKAFADYYTAL-HNDGIDIIKE--YSEYINSQI-DSDSNYSSTSVSSIQSFGSLDEFGNCETNY--

Query:  FFNKETNDLS-HHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKEQ---CRQGTSLLAPHTMLLRDSQPIQSSDFEWELL
            E    S  + +LEESC+IVD S    + + VS    K  SYKK + +AFSSK R  K   EQ    RQ            R+SQ ++  + +WE++
Subjt:  FFNKETNDLS-HHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKEQ---CRQGTSLLAPHTMLLRDSQPIQSSDFEWELL

A0A5A7UZW1 Uncharacterized protein3.6e-3246.29Show/hide
Query:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST
        MS+ + ++Y        +  ES FGDSA+E  S TS     I+ + +S++      S +LPNKAFA YY ALHND  +IIK   + I S IDS       
Subjt:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST

Query:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ
                GSL+++ + +    FNKE NDLSH + LE++CVIVD+ST PHDD   VS E P Q S+K+ IL A   KKRLA EYK+          +C Q
Subjt:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ

Query:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL
        G SL AP TMLL+DS Q IQSSD EWELL
Subjt:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL

A0A5D3D7Q1 Uncharacterized protein1.6e-3246.72Show/hide
Query:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST
        MS+ + ++Y        +  ES FGDSASE  S TS     I+ + +S++      S +LPNKAFA YY ALHND  +IIK   + I S IDS       
Subjt:  MSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTS---SYIYASDASDVE-----STLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSST

Query:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ
                GSL+++ + +    FNKE NDLSH + LE++CVIVD+ST PHDD   VS E P Q S+K+ IL A   KKRLA EYK+          +C Q
Subjt:  SVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFST-PHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE----------QCRQ

Query:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL
        G SL AP TMLL+DS Q IQSSD EWELL
Subjt:  GTSLLAPHTMLLRDS-QPIQSSDFEWELL

A0A6S7QP99 Uncharacterized protein3.3e-0925.5Show/hide
Query:  AMNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYIRK-VQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSE
        +M+      +W S +Y++FE+  ++VDE MNN+++KY+   +Q   E++ KFY+ + + ++ P        +    T +  SI  +     L+   +   
Subjt:  AMNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYIRK-VQYARENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSE

Query:  ESAFGDSASECLSPTSSYIYASDASDVESTLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYF-----F
           F +            +Y S  S+ + +L  +  + DY++A            S Y  S  +S ++ + +++SS   F   +E  +   N        
Subjt:  ESAFGDSASECLSPTSSYIYASDASDVESTLLPNKAFADYYTALHNDGIDIIKEYSEYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYF-----F

Query:  NKETNDLSHHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE---QCRQGTSLLAPHTMLLRDSQPIQSS-DFEWELL
        N +T DLS   +L +SCVIV+     +     S  + K  SYKK+I +AF S+ ++ KEYK+    C       +  T        +Q S D EWELL
Subjt:  NKETNDLSHHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKE---QCRQGTSLLAPHTMLLRDSQPIQSS-DFEWELL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACTTAATTTGTACTAGAACCATGAATGAAGATATTCTCATCTCTTATCCTTTTGTTATATATAAAAATGCCTTTATACTGTCAGAGTTTTGGTTAAATCTCGC
TAGTAGTTTTTTTAGCAAGGATGCTTTATGTGCTCTGGTGATTGCGTTGATTGCAGACTGTAACTCTGGTTTAGCGATTTGTGAAGCCATGAATTTAAGTGTTGCAGGCA
TGTCTTGGTTCAGTAACATTTACAGAAAGTTTGAATCTGTGTGTGAAGATGTGGATGAAGTTATGAACAATGAATCAATCAAATACATCAGAAAGGTCCAATATGCAAGA
GAAAATGTTATGAAGTTCTATTCTAAACTGGCTGAAGTTATAGTTTCTCCAATTATAGATCCAGATATCAGTGACGAGGAAGATGTTGATACACCAACTCATATGTCAAT
CTCATCATCTCTTCAATATGTTGGTTTGGTTCACAAATCAGATGATTCTGAAGAAAGTGCTTTTGGGGATTCTGCAAGTGAATGCCTTTCACCTACATCTTCTTACATAT
ATGCTTCAGATGCTTCAGATGTGGAAAGCACTCTGTTGCCAAATAAAGCTTTTGCTGACTATTATACTGCACTTCACAATGATGGGATTGATATAATCAAAGAGTATTCT
GAATATATTAATTCTCAGATCGACTCAGATTCAAACTACTCTTCTACTTCGGTCTCATCAATACAATCATTTGGGTCATTAGATGAGTTTGGTAATTGTGAAACTAATTA
CTTCTTCAACAAGGAAACAAATGATTTATCTCATCACATGGAGCTTGAAGAGAGCTGTGTCATTGTGGATTTTAGTACTCCCCATGATGATGATGTCGTTGTCTCTATTG
AAGCCCCAAAGCAACTTTCATATAAGAAAATGATCTTGGAGGCTTTCTCTTCCAAAAAGAGGTTGGCAAAGGAGTACAAAGAACAGTGCAGGCAAGGAACCAGTTTGCTT
GCTCCACACACAATGCTTTTGAGGGATTCTCAACCAATACAATCAAGTGACTTTGAATGGGAGCTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACTTAATTTGTACTAGAACCATGAATGAAGATATTCTCATCTCTTATCCTTTTGTTATATATAAAAATGCCTTTATACTGTCAGAGTTTTGGTTAAATCTCGC
TAGTAGTTTTTTTAGCAAGGATGCTTTATGTGCTCTGGTGATTGCGTTGATTGCAGACTGTAACTCTGGTTTAGCGATTTGTGAAGCCATGAATTTAAGTGTTGCAGGCA
TGTCTTGGTTCAGTAACATTTACAGAAAGTTTGAATCTGTGTGTGAAGATGTGGATGAAGTTATGAACAATGAATCAATCAAATACATCAGAAAGGTCCAATATGCAAGA
GAAAATGTTATGAAGTTCTATTCTAAACTGGCTGAAGTTATAGTTTCTCCAATTATAGATCCAGATATCAGTGACGAGGAAGATGTTGATACACCAACTCATATGTCAAT
CTCATCATCTCTTCAATATGTTGGTTTGGTTCACAAATCAGATGATTCTGAAGAAAGTGCTTTTGGGGATTCTGCAAGTGAATGCCTTTCACCTACATCTTCTTACATAT
ATGCTTCAGATGCTTCAGATGTGGAAAGCACTCTGTTGCCAAATAAAGCTTTTGCTGACTATTATACTGCACTTCACAATGATGGGATTGATATAATCAAAGAGTATTCT
GAATATATTAATTCTCAGATCGACTCAGATTCAAACTACTCTTCTACTTCGGTCTCATCAATACAATCATTTGGGTCATTAGATGAGTTTGGTAATTGTGAAACTAATTA
CTTCTTCAACAAGGAAACAAATGATTTATCTCATCACATGGAGCTTGAAGAGAGCTGTGTCATTGTGGATTTTAGTACTCCCCATGATGATGATGTCGTTGTCTCTATTG
AAGCCCCAAAGCAACTTTCATATAAGAAAATGATCTTGGAGGCTTTCTCTTCCAAAAAGAGGTTGGCAAAGGAGTACAAAGAACAGTGCAGGCAAGGAACCAGTTTGCTT
GCTCCACACACAATGCTTTTGAGGGATTCTCAACCAATACAATCAAGTGACTTTGAATGGGAGCTTCTTTGA
Protein sequenceShow/hide protein sequence
MVNLICTRTMNEDILISYPFVIYKNAFILSEFWLNLASSFFSKDALCALVIALIADCNSGLAICEAMNLSVAGMSWFSNIYRKFESVCEDVDEVMNNESIKYIRKVQYAR
ENVMKFYSKLAEVIVSPIIDPDISDEEDVDTPTHMSISSSLQYVGLVHKSDDSEESAFGDSASECLSPTSSYIYASDASDVESTLLPNKAFADYYTALHNDGIDIIKEYS
EYINSQIDSDSNYSSTSVSSIQSFGSLDEFGNCETNYFFNKETNDLSHHMELEESCVIVDFSTPHDDDVVVSIEAPKQLSYKKMILEAFSSKKRLAKEYKEQCRQGTSLL
APHTMLLRDSQPIQSSDFEWELL