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Clc07G09540 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G09540
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmultiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like
Genome locationClcChr07:23989293..23991000
RNA-Seq ExpressionClc07G09540
SyntenyClc07G09540
Gene Ontology termsGO:0016554 - cytidine to uridine editing (biological process)
InterPro domainsIPR039206 - MORF/ORRM1/DAG-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043479.1 multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa]3.1e-1939.48Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNG-----------LPPPPSLNFNGLPPPPP---------------PPPNP----RGAPP------
                   P++S       NFNRPPP P NNFNG            PPPP  NFNG PPPPP               PPP P     G PP      
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNG-----------LPPPPSLNFNGLPPPPP---------------PPPNP----RGAPP------

Query:  ---HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV
           +NYWGAPQ NNYGGPSN G   AQNNY GV
Subjt:  ---HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV

XP_008437005.1 PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucumis melo]1.8e-1938.79Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-----------------PPPPPNPRGAPP-------------------
                   P++S       NFNRPPP P NNFNG PPPP  NFN  PPP                 PPPPPN    PP                   
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-----------------PPPPPNPRGAPP-------------------

Query:  --HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV
          +NYWGAPQ NNYGGPSN G   AQNNY GV
Subjt:  --HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV

XP_011654842.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis sativus]2.8e-2042.5Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-------PPPPPNPRGAPPHNYWGAPQPNNYGGPSNVGGLLAQNNYRG
                   P++S       NFNRPPP P NN+N  PPPP+ NFN  PPP       PPPP N  G+ P+NYWGAPQ NNYGGPSN G + AQN+Y G
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-------PPPPPNPRGAPPHNYWGAPQPNNYGGPSNVGGLLAQNNYRG

XP_038889853.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Benincasa hispida]5.3e-1934.56Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK                                                                    
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------

Query:  ----------------------------------------------------GNYLGGPSSSNNFNR----------PPPSPSNNFNGLPPPPSL-----
                                                            GNY GGP   NNFN+          PPP P NNFNG PPPP L     
Subjt:  ----------------------------------------------------GNYLGGPSSSNNFNR----------PPPSPSNNFNGLPPPPSL-----

Query:  -------NFNGLPPPP-------PPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRGV
               NFNG P PP       PPPPNP GAPPH        NYWGAPQPNNYGGPS  G   AQN+Y GV
Subjt:  -------NFNGLPPPP-------PPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRGV

XP_038904331.1 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Benincasa hispida]5.0e-1732.26Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK                                                                    
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------

Query:  ------------------------------------------GNYLGGPSSSNNFNR----------------------PPPSPSNNFNGLPPPPSLNFN
                                                  GNY GGP   NNFNR                      PPP P NNFN  PPPP+ NFN
Subjt:  ------------------------------------------GNYLGGPSSSNNFNR----------------------PPPSPSNNFNGLPPPPSLNFN

Query:  GLPPPP------------------------PPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRGV
        G PPPP                        PP PNP  APPH        NYWGAPQPN+YGGPSN G    QN+Y G+
Subjt:  GLPPPP------------------------PPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRGV

TrEMBL top hitse value%identityAlignment
A0A0A0KPF6 Uncharacterized protein1.4e-2042.5Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-------PPPPPNPRGAPPHNYWGAPQPNNYGGPSNVGGLLAQNNYRG
                   P++S       NFNRPPP P NN+N  PPPP+ NFN  PPP       PPPP N  G+ P+NYWGAPQ NNYGGPSN G + AQN+Y G
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-------PPPPPNPRGAPPHNYWGAPQPNNYGGPSNVGGLLAQNNYRG

A0A1S3ASM8 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like8.9e-2038.79Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-----------------PPPPPNPRGAPP-------------------
                   P++S       NFNRPPP P NNFNG PPPP  NFN  PPP                 PPPPPN    PP                   
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNGLPPPPSLNFNGLPPP-----------------PPPPPNPRGAPP-------------------

Query:  --HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV
          +NYWGAPQ NNYGGPSN G   AQNNY GV
Subjt:  --HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV

A0A5A7TQJ8 Multiple organellar RNA editing factor 81.5e-1939.48Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK           +YL       GG                                             
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYL-------GG---------------------------------------------

Query:  -----------PSSS------NNFNRPPPSPSNNFNG-----------LPPPPSLNFNGLPPPPP---------------PPPNP----RGAPP------
                   P++S       NFNRPPP P NNFNG            PPPP  NFNG PPPPP               PPP P     G PP      
Subjt:  -----------PSSS------NNFNRPPPSPSNNFNG-----------LPPPPSLNFNGLPPPPP---------------PPPNP----RGAPP------

Query:  ---HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV
           +NYWGAPQ NNYGGPSN G   AQNNY GV
Subjt:  ---HNYWGAPQPNNYGGPSNVGGLLAQNNYRGV

A0A6J1E5B5 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X23.5e-1633.73Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK                                                                    
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------

Query:  ----------------------------------------------------GNYLGG--PSSSNNFNRPPPSPSNNFNGLPPPPSLNFNGL--------
                                                            GNY GG  P   NNF+ PPP P NNF G PPPP  N+ G         
Subjt:  ----------------------------------------------------GNYLGG--PSSSNNFNRPPPSPSNNFNGLPPPPSLNFNGL--------

Query:  PPPPPPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRG
        PPPPPPPP+   APPH        NYWG P PNNYGGPS+ GG   QNNY G
Subjt:  PPPPPPPPNPRGAPPH--------NYWGAPQPNNYGGPSNVGGLLAQNNYRG

A0A6J1EA12 multiple organellar RNA editing factor 8, chloroplastic/mitochondrial isoform X16.6e-1531.56Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------
        EEE RMKIYSVSTRC FAFGCLVSEELSYKIK                                                                    
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK--------------------------------------------------------------------

Query:  ----------------------------------------------------GNYLGG--PSSSNNFNRPPPSPSNNFNGLPPPPSLNFNG---------
                                                            GNY GG  P   NNF+ PPP P N   G PPPP  NF G         
Subjt:  ----------------------------------------------------GNYLGG--PSSSNNFNRPPPSPSNNFNGLPPPPSLNFNG---------

Query:  --------LPPPPPPPPNPRGAP----------PHNYWGAPQPNNYGGPSNVGGLLAQNNYRG
                 PPPPPPPP P   P          P+NYWG P PNNYGGPS+ GG   QNNY G
Subjt:  --------LPPPPPPPPNPRGAP----------PHNYWGAPQPNNYGGPSNVGGLLAQNNYRG

SwissProt top hitse value%identityAlignment
Q9LKA5 Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial4.4e-0834.22Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK------------------GNYLGGP---------------------SSSNNFNRPPPSPSN-------
        E+E RMKIYSVSTRC +AFG LVSE+LS+K+K                   +Y G P                     + +N  NR    P N       
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK------------------GNYLGGP---------------------SSSNNFNRPPPSPSN-------

Query:  -----NFNGLPPPPSLNFNGLPPPP------PPPPNPRGA---PPH--NYWGAPQPNNYGGP-----------SNVGGLLAQNNYRG
             N  G PPP      G PPPP      PPPP+  G+   PPH    +G P PNN GGP           +N+GG     NY G
Subjt:  -----NFNGLPPPPSLNFNGLPPPP------PPPPNPRGA---PPH--NYWGAPQPNNYGGP-----------SNVGGLLAQNNYRG

Arabidopsis top hitse value%identityAlignment
AT1G53260.1 LOCATED IN: endomembrane system2.1e-0533.76Show/hide
Query:  MKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYLGGP-----------------------------SSSNNFNRPPPSPSNNFNG--------
        MKIYSVS +C FAFG LVSE+LS+KIK           +YL G                              +++ N NR P  P N+  G        
Subjt:  MKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYLGGP-----------------------------SSSNNFNRPPPSPSNNFNG--------

Query:  ---LPPPPSLNFNGLPPPPPPPPNPRGAPPH--------NYWGAPQP----NNYGGP
             PPP+    G PPPPP   N    PPH        NY G P P     NY GP
Subjt:  ---LPPPPSLNFNGLPPPPPPPPNPRGAPPH--------NYWGAPQP----NNYGGP

AT1G53260.2 LOCATED IN: endomembrane system4.0e-0433.59Show/hide
Query:  MKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYLGGP-----------------------------SSSNNFNRPPPSPSNNFNG--------
        MKIYSVS +C FAFG LVSE+LS+KIK           +YL G                              +++ N NR P  P N+  G        
Subjt:  MKIYSVSTRCCFAFGCLVSEELSYKIK----------GNYLGGP-----------------------------SSSNNFNRPPPSPSNNFNG--------

Query:  ---LPPPPSLNFNGLPPPPPPPPNPRGAPPH
             PPP+    G PPPPP   N    PPH
Subjt:  ---LPPPPSLNFNGLPPPPPPPPNPRGAPPH

AT3G15000.1 cobalt ion binding3.1e-0934.22Show/hide
Query:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK------------------GNYLGGP---------------------SSSNNFNRPPPSPSN-------
        E+E RMKIYSVSTRC +AFG LVSE+LS+K+K                   +Y G P                     + +N  NR    P N       
Subjt:  EEEGRMKIYSVSTRCCFAFGCLVSEELSYKIK------------------GNYLGGP---------------------SSSNNFNRPPPSPSN-------

Query:  -----NFNGLPPPPSLNFNGLPPPP------PPPPNPRGA---PPH--NYWGAPQPNNYGGP-----------SNVGGLLAQNNYRG
             N  G PPP      G PPPP      PPPP+  G+   PPH    +G P PNN GGP           +N+GG     NY G
Subjt:  -----NFNGLPPPPSLNFNGLPPPP------PPPPNPRGA---PPH--NYWGAPQPNNYGGP-----------SNVGGLLAQNNYRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTGAGAATTCTAAATGGAATTCCGGGTCACCACAGATACTATTTTCTCTATCCGCTCCTTCACTACAGGATAATTTCTCAGTATATCGGTGTCTATGTGATAA
ATGTGAGGAAGAAGGTAGGATGAAGATATACTCTGTTTCAACCAGATGCTGCTTTGCATTTGGGTGCCTTGTTTCCGAAGAACTTTCTTACAAAATCAAAGGTAACTATT
TGGGAGGACCATCATCGTCGAACAATTTTAATAGACCACCGCCTTCGCCATCGAACAACTTTAACGGACTTCCGCCACCGCCATCACTGAACTTTAACGGACTACCACCA
CCACCACCACCACCACCAAACCCCCGAGGAGCACCACCACACAACTATTGGGGAGCACCACAGCCAAACAACTATGGTGGACCTTCAAACGTCGGTGGGCTGCTTGCACA
AAACAACTACAGGGGTGTAGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTGAGAATTCTAAATGGAATTCCGGGTCACCACAGATACTATTTTCTCTATCCGCTCCTTCACTACAGGATAATTTCTCAGTATATCGGTGTCTATGTGATAA
ATGTGAGGAAGAAGGTAGGATGAAGATATACTCTGTTTCAACCAGATGCTGCTTTGCATTTGGGTGCCTTGTTTCCGAAGAACTTTCTTACAAAATCAAAGGTAACTATT
TGGGAGGACCATCATCGTCGAACAATTTTAATAGACCACCGCCTTCGCCATCGAACAACTTTAACGGACTTCCGCCACCGCCATCACTGAACTTTAACGGACTACCACCA
CCACCACCACCACCACCAAACCCCCGAGGAGCACCACCACACAACTATTGGGGAGCACCACAGCCAAACAACTATGGTGGACCTTCAAACGTCGGTGGGCTGCTTGCACA
AAACAACTACAGGGGTGTAGCCTAA
Protein sequenceShow/hide protein sequence
MEFENSKWNSGSPQILFSLSAPSLQDNFSVYRCLCDKCEEEGRMKIYSVSTRCCFAFGCLVSEELSYKIKGNYLGGPSSSNNFNRPPPSPSNNFNGLPPPPSLNFNGLPP
PPPPPPNPRGAPPHNYWGAPQPNNYGGPSNVGGLLAQNNYRGVA