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Clc07G09900 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G09900
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Genome locationClcChr07:24344056..24346720
RNA-Seq ExpressionClc07G09900
SyntenyClc07G09900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063029.1 hypothetical protein E6C27_scaffold468G001370 [Cucumis melo var. makuwa]1.4e-3961.5Show/hide
Query:  GGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTR----------------------------------------
        GGYKKK  +H LPTPSVSIGRSRPL   QTY DVEFGQG RTYRQD + RSEQS+ PDTR                                        
Subjt:  GGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTR----------------------------------------

Query:  ---GSRRSERTDRQD-TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG--GCGNRCQ
           GSRRSER DRQD TRES IKDGGMAILAGAGAAIATAA VLGLSS QGGEDIDGGYVD   DGTD  GVYGGGGG   CGN  Q
Subjt:  ---GSRRSERTDRQD-TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG--GCGNRCQ

KAE8649249.1 hypothetical protein Csa_015081, partial [Cucumis sativus]4.4e-4659.91Show/hide
Query:  FYLGEVP-MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDT
        +Y  +VP MLLD KPSILI IICT ++VV  ILCCFCIIG  GY+KK  +++LPTPSVSIGRSRPL   QTY D+EFGQG RTYRQD + RSE+S+  DT
Subjt:  FYLGEVP-MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDT

Query:  RG------------------------------------------SRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVD
        RG                                          SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS QGGEDIDG YVD
Subjt:  RG------------------------------------------SRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVD

Query:  TRVDGTDADGVYGGGGG
           DGTD  GVYGGG G
Subjt:  TRVDGTDADGVYGGGGG

KAG6600486.1 hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2248.48Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR---PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE---
        KPSI+I IIC  ++  VVILCC CII RG  +K  T    PTPS SI   R   P WP Q+Y+DVE GQG R +RQD + RSEQSV  D  G++RSE   
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR---PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE---

Query:  -RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGE------------DIDGGYVDTRVDGTDADGVYGGGGGGCGNRC
         RTDR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  G E             +  GY D+  +G    G   GGGG CG  C
Subjt:  -RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGE------------DIDGGYVDTRVDGTDADGVYGGGGGGCGNRC

XP_022942031.1 glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]8.9e-2349Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR----PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE--
        KPSI+I IIC  ++  VVILCC CII RG  +K  T    PTPS SI   R    P WP Q+Y+DVE GQG R YRQD + RSEQSV  D  G++RSE  
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR----PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE--

Query:  --RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDG-------------GYVDTRVDGTDADGVYGGGGGGCGNRC
          RTDR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  GG++  G             GY D+  +G    G   GGGG CG  C
Subjt:  --RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDG-------------GYVDTRVDGTDADGVYGGGGGGCGNRC

XP_023543717.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]8.1e-2450Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR---PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE---
        KPSI+I IIC  ++  VVILCC CII RG  +K  T    PTPS SI   R   P WP Q+Y+DVE GQG R YRQD + RSEQSV  D  G++RSE   
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR---PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE---

Query:  -RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYG------------GGGGGCGNRC
         RTDR  +           ++SG KDGGMAILAGAGAA+A AAA +GLSS  GG++  G       DG+  DG YG            GGGG CG  C
Subjt:  -RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYG------------GGGGGCGNRC

TrEMBL top hitse value%identityAlignment
A0A0A0L0B2 Uncharacterized protein3.1e-4560.77Show/hide
Query:  MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRG------
        MLLD KPSILI IICT ++VV  ILCCFCIIG  GY+KK  +++LPTPSVSIGRSRPL   QTY D+EFGQG RTYRQD + RSE+S+  DTRG      
Subjt:  MLLD-KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRG------

Query:  ------------------------------------SRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDA
                                            SRRSE+ DRQDTRES IKDGGMAILAGAGAAIATAA VLGLSS QGGEDIDG YVD   DGTD 
Subjt:  ------------------------------------SRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDA

Query:  DGVYGGGGG
         GVYGGG G
Subjt:  DGVYGGGGG

A0A5A7VBP6 Uncharacterized protein6.6e-4061.5Show/hide
Query:  GGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTR----------------------------------------
        GGYKKK  +H LPTPSVSIGRSRPL   QTY DVEFGQG RTYRQD + RSEQS+ PDTR                                        
Subjt:  GGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTR----------------------------------------

Query:  ---GSRRSERTDRQD-TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG--GCGNRCQ
           GSRRSER DRQD TRES IKDGGMAILAGAGAAIATAA VLGLSS QGGEDIDGGYVD   DGTD  GVYGGGGG   CGN  Q
Subjt:  ---GSRRSERTDRQD-TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGG--GCGNRCQ

A0A5J5AB60 Uncharacterized protein9.1e-0534.91Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQD
        K   +  I+C  V   V++LCC C    GG KKK T+H     SVS   + P  P Q Y DVE G                                 + 
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQD

Query:  TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQG-GEDIDGGYVDTRVDGTDADGVYGGGGGGCGNRC
         + SG +DG M ILAGA AA A AA ++  SS  G G D  GG           DG  GG GGGCG  C
Subjt:  TRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQG-GEDIDGGYVDTRVDGTDADGVYGGGGGGCGNRC

A0A6J1CLX2 ctenidin-3-like2.1e-1747.25Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTY--HDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDR
        KP   I IIC+ VI  VVILCC CII   G KKK+T    P  S +IG SR  WP QTY  HD+E GQG                           RT+R
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLWPPQTY--HDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDR

Query:  QDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD-----QGGEDIDGGYVD-TRVDGTDADGVYG--------GGGGGCGN
        Q  R SGIKDGGMAILAGAG AIATAA + GLSS+      G +  DGG  D    DG+  DG  G        GGGGGCG+
Subjt:  QDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSD-----QGGEDIDGGYVD-TRVDGTDADGVYG--------GGGGGCGN

A0A6J1FMR9 glycine-rich RNA-binding protein GRP2A-like4.3e-2349Show/hide
Query:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR----PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE--
        KPSI+I IIC  ++  VVILCC CII RG  +K  T    PTPS SI   R    P WP Q+Y+DVE GQG R YRQD + RSEQSV  D  G++RSE  
Subjt:  KPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSR----PLWPPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSE--

Query:  --RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDG-------------GYVDTRVDGTDADGVYGGGGGGCGNRC
          RTDR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  GG++  G             GY D+  +G    G   GGGG CG  C
Subjt:  --RTDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDG-------------GYVDTRVDGTDADGVYGGGGGGCGNRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTCTGCCTACGCTTTTTGCCCACACATGAAAATGTTGGCATAACCTCTGTTGATGCTTTCACGCTTTCTGCGTCGGTAGAGACAAAAATTCTTATAATGCAACA
TGCTCATTCCCTTGACATTGTTGGTTTTTATCTTGGTGAAGTCCCAATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTG
TTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGG
CCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCG
AAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCC
TTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGT
GGGAATCGCTGCCAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTCTGCCTACGCTTTTTGCCCACACATGAAAATGTTGGCATAACCTCTGTTGATGCTTTCACGCTTTCTGCGTCGGTAGAGACAAAAATTCTTATAATGCAACA
TGCTCATTCCCTTGACATTGTTGGTTTTTATCTTGGTGAAGTCCCAATGTTATTGGATAAACCTTCCATCCTCATTTTCATAATTTGCACTTGTGTAATAGTTGTTGTTG
TTATTTTATGTTGCTTTTGTATAATTGGCCGAGGTGGTTATAAAAAGAAACAAACATCACATGAATTACCAACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGG
CCTCCTCAAACGTACCATGATGTTGAATTTGGACAAGGTTTTCGAACCTACAGACAAGACATGTCTCAGAGAAGCGAACAGAGCGTTCGACCGGACACACGAGGTTCTCG
AAGAAGCGAACGAACAGACCGACAAGATACTCGAGAAAGTGGAATCAAGGACGGCGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTGTCC
TTGGTTTAAGTAGTGATCAAGGAGGAGAAGATATCGATGGTGGCTATGTCGATACTCGTGTCGATGGTACTGATGCCGATGGCGTCTACGGTGGTGGTGGTGGCGGCTGT
GGGAATCGCTGCCAAAACTGA
Protein sequenceShow/hide protein sequence
MDFCLRFLPTHENVGITSVDAFTLSASVETKILIMQHAHSLDIVGFYLGEVPMLLDKPSILIFIICTCVIVVVVILCCFCIIGRGGYKKKQTSHELPTPSVSIGRSRPLW
PPQTYHDVEFGQGFRTYRQDMSQRSEQSVRPDTRGSRRSERTDRQDTRESGIKDGGMAILAGAGAAIATAAAVLGLSSDQGGEDIDGGYVDTRVDGTDADGVYGGGGGGC
GNRCQN